consensus_cluster |
Consensus Clustering and Proportion of Ambiguously Clustered Pairs |
element_agreement |
Element-Wise Average Agreement Between a Set of Clusterings |
element_consistency |
Element-Wise Consistency Between a Set of Clusterings |
element_sim |
The Element-Centric Clustering Similarity |
element_sim_elscore |
The Element-Centric Clustering Similarity for each Element |
element_sim_matrix |
Pairwise Comparison of Clusterings |
get_clustering_difference |
Graph Clustering Method Stability |
get_feature_stability |
Evaluate Feature Set Stability |
get_nn_conn_comps |
Relationship Between Nearest Neighbors and Connected Components |
get_nn_importance |
Assess Graph Building Parameters |
get_resolution_importance |
Evaluate Stability Across Resolution, Number of Neighbors, and Graph Type |
marker_overlap |
Cell-Wise Marker Gene Overlap |
merge_partitions |
Merge Partitions |
pac_convergence |
PAC Convergence Plot |
pac_landscape |
PAC Landscape Plot |
plot_clustering_difference_boxplot |
Clustering Method Stability Boxplot |
plot_clustering_difference_facet |
Clustering Method Stability Facet Plot |
plot_connected_comps_evolution |
Relationship Between Number of Nearest Neighbors and Graph Connectivity |
plot_feature_stability_boxplot |
Feature Stability Boxplot |
plot_feature_stability_ecs_facet |
Feature Stability - EC Consistency Facet Plot |
plot_feature_stability_ecs_incremental |
Feature Stability Incremental Boxplot |
plot_feature_stability_mb_facet |
Feature Stability - Cluster Membership Facet Plot |
plot_k_n_partitions |
Relationship Between the Number of Clusters and the Number of Unique Partitions |
plot_k_resolution_corresp |
Correspondence Between Resolution and the Number of Clusters |
plot_n_neigh_ecs |
Graph construction parameters - ECC facet |
plot_n_neigh_k_correspondence |
Relationship Between Number of Nearest Neighbors and Number of Clusters |