Mediterranean Forest Simulation
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Documentation for package ‘medfate’ version 4.4.0
Help Pages
| defaultControl | Control parameters for simulation models |
| defaultManagementArguments | Default forest management actions |
| defaultManagementFunction | Default forest management actions |
| defaultSoilParams | Default soil parameters |
| droughtStress | Drought stress indicators |
| emptyforest | Creation of an empty forest |
| evaluation | Evaluation of simulations results |
| evaluation_metric | Evaluation of simulations results |
| evaluation_plot | Evaluation of simulations results |
| evaluation_stats | Evaluation of simulations results |
| evaluation_table | Evaluation of simulations results |
| exampleforest | Description of a forest stand. |
| exampleforest2 | Description of a forest stand. |
| examplemeteo | Example daily meteorology data |
| exampleobs | Example observed data |
| extract | Extracts model outputs |
| fireHazard | Fire hazard |
| fire_behaviour | Fire behaviour functions |
| fire_FCCS | Fire behaviour functions |
| fire_Rothermel | Fire behaviour functions |
| fordyn | Forest dynamics |
| forest | Description of a forest stand. |
| forest_mapShrubTable | Map forest plot data |
| forest_mapTreeTable | Map forest plot data |
| forest_mapWoodyTables | Map forest plot data |
| forest_mergeShrubs | Forest complexity reduction |
| forest_mergeTrees | Forest complexity reduction |
| forest_reduceToDominant | Forest complexity reduction |
| forest_simplification | Forest complexity reduction |
| fuel_FCCS | Fuel stratification and fuel characteristics |
| fuel_properties | Fuel stratification and fuel characteristics |
| fuel_stratification | Fuel stratification and fuel characteristics |
| growth | Forest growth |
| growthInput | Input for simulation models |
| growth_day | Single-day simulation |
| modelInput | Input for simulation models |
| modifyCohortParams | Modify parameters |
| modifyInputParams | Modify parameters |
| modifyParams | Modify parameters |
| modifySpParams | Modify parameters |
| multiple_runs | Multiple model runs and function factories for optimization routines |
| optimization | Multiple model runs and function factories for optimization routines |
| optimization_evaluation_function | Multiple model runs and function factories for optimization routines |
| optimization_evaluation_multicohort_function | Multiple model runs and function factories for optimization routines |
| optimization_function | Multiple model runs and function factories for optimization routines |
| optimization_multicohort_function | Multiple model runs and function factories for optimization routines |
| plot.fordyn | Plots simulation results |
| plot.forest | Plot forest attributes |
| plot.growth | Plots simulation results |
| plot.growth_day | Plots simulation results for one day |
| plot.pwb | Plots simulation results |
| plot.pwb_day | Plots simulation results for one day |
| plot.spwb | Plots simulation results |
| plot.spwb_day | Plots simulation results for one day |
| poblet_trees | Example forest inventory data |
| print.summary.forest | Summary of forest structure |
| pwb | Soil-plant water balance |
| resetInputs | Reset simulation inputs |
| resistances | Soil-plant resistances |
| SFM_metric | Standard fuel models (Albini 1976, Scott & Burgan 2005) |
| shinyplot | Shiny app with interactive plots |
| shinyplot.fordyn | Shiny app with interactive plots |
| shinyplot.forest | Plot forest attributes |
| shinyplot.growth | Shiny app with interactive plots |
| shinyplot.growth_day | Shiny app with interactive plots |
| shinyplot.pwb | Shiny app with interactive plots |
| shinyplot.pwb_day | Shiny app with interactive plots |
| shinyplot.spwb | Shiny app with interactive plots |
| shinyplot.spwb_day | Shiny app with interactive plots |
| shrub2forest | Single-cohort forests |
| soil | Soil initialization |
| soil_redefineLayers | Redefine soil layer widths |
| SpParams | Data tables with species parameter definitions and values |
| SpParamsDefinition | Data tables with species parameter definitions and values |
| SpParamsMED | Data tables with species parameter definitions and values |
| spwb | Soil-plant water balance |
| spwbInput | Input for simulation models |
| spwb_day | Single-day simulation |
| summary.fordyn | Summarize simulation results |
| summary.forest | Summary of forest structure |
| summary.growth | Summarize simulation results |
| summary.pwb | Summarize simulation results |
| summary.soil | Soil initialization |
| summary.spwb | Summarize simulation results |
| trait_family_means | Parameter average values |
| tree2forest | Single-cohort forests |
| waterUseEfficiency | Water use efficiency |