counts_hiv_transmission_pairs |
Observed HIV transmission pairs |
c_hat |
'estimate_c_hat' Estimates probability of clustering |
estimated_hiv_transmission_flows |
Estimated HIV transmission flows |
estimate_c_hat |
'estimate_c_hat' Estimates probability of clustering |
estimate_c_hat.default |
'estimate_c_hat' Estimates probability of clustering |
estimate_multinom_ci |
'estimate_multinom_ci' Estimates confidence intervals for transmission flows |
estimate_multinom_ci.default |
'estimate_multinom_ci' Estimates confidence intervals for transmission flows |
estimate_prob_group_pairing_and_linked |
'estimate_prob_group_pairing_and_linked' Estimates joint probability of linkage |
estimate_prob_group_pairing_and_linked.default |
'estimate_prob_group_pairing_and_linked' Estimates joint probability of linkage |
estimate_p_hat |
'estimate_p_hat' Estimates probability of linkage between two individuals |
estimate_p_hat.default |
'estimate_p_hat' Estimates probability of linkage between two individuals |
estimate_theta_hat |
'estimate_theta_hat' Estimates conditional probability of linkage (transmission flows) |
estimate_theta_hat.default |
'estimate_theta_hat' Estimates conditional probability of linkage (transmission flows) |
estimate_transmission_flows_and_ci |
'estimate_transmission_flows_and_ci' Estimates transmission flows and corresponding confidence intervals |
estimate_transmission_flows_and_ci.default |
'estimate_transmission_flows_and_ci' Estimates transmission flows and corresponding confidence intervals |
estim_c_hat |
'estimate_c_hat' Estimates probability of clustering |
estim_multinom_ci |
'estimate_multinom_ci' Estimates confidence intervals for transmission flows |
estim_p_hat |
'estimate_p_hat' Estimates probability of linkage between two individuals |
estim_theta_hat |
'estimate_theta_hat' Estimates conditional probability of linkage (transmission flows) |
est_c_hat |
'estimate_c_hat' Estimates probability of clustering |
est_multinom_ci |
'estimate_multinom_ci' Estimates confidence intervals for transmission flows |
est_p_hat |
'estimate_p_hat' Estimates probability of linkage between two individuals |
est_theta_hat |
'estimate_theta_hat' Estimates conditional probability of linkage (transmission flows) |
flows_and_ci |
'estimate_transmission_flows_and_ci' Estimates transmission flows and corresponding confidence intervals |
phat |
'estimate_p_hat' Estimates probability of linkage between two individuals |
pp |
'prep_p_hat' Prepares input data to estimate 'p_hat' |
prep_phat |
'prep_p_hat' Prepares input data to estimate 'p_hat' |
prep_p_hat |
'prep_p_hat' Prepares input data to estimate 'p_hat' |
prep_p_hat.default |
'prep_p_hat' Prepares input data to estimate 'p_hat' |
prob_group_pairing_and_linked |
'estimate_prob_group_pairing_and_linked' Estimates joint probability of linkage |
p_hat |
'estimate_p_hat' Estimates probability of linkage between two individuals |
sampling_frequency |
Sampling fequency |
theta_hat |
'estimate_theta_hat' Estimates conditional probability of linkage (transmission flows) |