A Genome-Wide Scan Statistic Framework for Whole-Genome Sequence Data Analysis

Documentation for package ‘GenoScan’ version 0.1

GenoScan.example	Data example for GenoScan (A Genome-Wide Scan Statistic Framework For Whole-Genome Sequence Data Analysis)
GenoScan.info	hg19 chromosome sizes
GenoScan.prelim	The preliminary data management for GenoScan
GenoScan.Region	Scan the association between an quantitative/dichotomous outcome variable and a region by score type statistics allowing for multiple functional annotation scores.
GenoScan.SingleWindow	Test the association between an quantitative/dichotomous outcome variable and a single window by dispersion or burden test allowing for multiple functional annotation scores.
GenoScan.VCF.chr	Scan a VCF file to study the association between an quantitative/dichotomous outcome variable and a region or whole chromosome by score type statistics allowing for multiple functional annotation scores.