PARAFAC Analysis of Fluorescence Excitation-Emission Matrices

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Documentation for package ‘albatross’ version 0.3-8

• DESCRIPTION file.
• Package NEWS.

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albatross-package	PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
absindex	Functions of absorbance data
absorp	Synthetic fluorescence excitation-emission matrices and absorbance spectra
albatross	PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
as.data.frame.feem	Transform a FEEM object into a data.frame
as.data.frame.feemcube	Transform a FEEM object into a data.frame
as.list.feemcube	Data cubes of fluorescence excitation-emission matrices
coef.feemflame	Fluorescence and scAttering Model Estimation
coef.feemjackknife	Jack-knife outlier detection in PARAFAC models
coef.feemparafac	Compute PARAFAC on a FEEM cube object and access the results
coef.feemsplithalf	Split-half analysis of PARAFAC models
cube	Synthetic fluorescence excitation-emission matrices and absorbance spectra
diverging.colours	Perceptually uniform palettes
feem	Create a fluorescence excitation-emission matrix object
feem.character	Create a fluorescence excitation-emission matrix object
feem.connection	Create a fluorescence excitation-emission matrix object
feem.data.frame	Create a fluorescence excitation-emission matrix object
feem.matrix	Create a fluorescence excitation-emission matrix object
feemcorcondia	Core consistency diagnostic for PARAFAC models
feemcube	Data cubes of fluorescence excitation-emission matrices
feemcube.array	Data cubes of fluorescence excitation-emission matrices
feemcube.feemflame	Data cubes of fluorescence excitation-emission matrices
feemcube.feemjackknife	Data cubes of fluorescence excitation-emission matrices
feemcube.feemparafac	Data cubes of fluorescence excitation-emission matrices
feemcube.feemsplithalf	Data cubes of fluorescence excitation-emission matrices
feemcube.list	Data cubes of fluorescence excitation-emission matrices
feemflame	Fluorescence and scAttering Model Estimation
feemgrid	Interpolate FEEMs on a given wavelength grid
feemgrid.feem	Interpolate FEEMs on a given wavelength grid
feemgrid.feemcube	Interpolate FEEMs on a given wavelength grid
feemgrid.list	Interpolate FEEMs on a given wavelength grid
feemife	Absorbance-based inner filter effect correction
feemife.feem	Absorbance-based inner filter effect correction
feemife.feemcube	Absorbance-based inner filter effect correction
feemife.list	Absorbance-based inner filter effect correction
feemindex	Fluorescence indices and peak values
feemindex.feem	Fluorescence indices and peak values
feemindex.feemcube	Fluorescence indices and peak values
feemindex.list	Fluorescence indices and peak values
feemjackknife	Jack-knife outlier detection in PARAFAC models
feemlist	Create lists of FEEM objects
feemlist.character	Create lists of FEEM objects
feemlist.EEM	Create lists of FEEM objects
feemlist.eemlist	Create lists of FEEM objects
feemparafac	Compute PARAFAC on a FEEM cube object and access the results
feems	Synthetic fluorescence excitation-emission matrices and absorbance spectra
feemscale	Rescale FEEM spectra to a given norm and remember the scale factor
feemscale.feem	Rescale FEEM spectra to a given norm and remember the scale factor
feemscale.feemcube	Rescale FEEM spectra to a given norm and remember the scale factor
feemscale.list	Rescale FEEM spectra to a given norm and remember the scale factor
feemscatter	Handle scattering signal in FEEMs
feemscatter.feem	Handle scattering signal in FEEMs
feemscatter.feemcube	Handle scattering signal in FEEMs
feemscatter.list	Handle scattering signal in FEEMs
feemsplithalf	Split-half analysis of PARAFAC models
fitted.feemflame	Fluorescence and scAttering Model Estimation
fitted.feemparafac	Compute PARAFAC on a FEEM cube object and access the results
marine.colours	Perceptually uniform palettes
plot.feem	Plot a FEEM object
plot.feem.resid	Plot a FEEM object
plot.feemcube	Plot a FEEM object
plot.feemflame	Fluorescence and scAttering Model Estimation
plot.feemjackknife	Jack-knife outlier detection in PARAFAC models
plot.feemparafac	Compute PARAFAC on a FEEM cube object and access the results
plot.feemsplithalf	Split-half analysis of PARAFAC models
print.feemcorcondia	Core consistency diagnostic for PARAFAC models
print.feemparafac	Compute PARAFAC on a FEEM cube object and access the results
print.feemsplithalf	Split-half analysis of PARAFAC models
reorder.feemparafac	Compute PARAFAC on a FEEM cube object and access the results
rescale	Compute PARAFAC on a FEEM cube object and access the results
rescale.feemparafac	Compute PARAFAC on a FEEM cube object and access the results
residuals.feemflame	Fluorescence and scAttering Model Estimation
residuals.feemparafac	Compute PARAFAC on a FEEM cube object and access the results
t.feem	Create a fluorescence excitation-emission matrix object
write.openfluor	Export a PARAFAC model for the OpenFluor database
[.feem	Extract or replace parts of FEEM objects
[.feemcube	Extract or replace parts of FEEM cubes
[<-.feem	Extract or replace parts of FEEM objects
[<-.feemcube	Extract or replace parts of FEEM cubes