PARAFAC Analysis of Fluorescence Excitation-Emission Matrices


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Documentation for package ‘albatross’ version 0.3-1

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albatross-package PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
absorp Fluorescence excitation-emission matrices and absorbance spectra
albatross PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
as.data.frame.feem Transform a FEEM object into a data.frame
as.data.frame.feemcube Transform a FEEM object into a data.frame
as.list.feemcube Transform a FEEM cube object into a list of FEEM objects
coef.feemjackknife Jack-knife outlier detection in PARAFAC models
coef.feemparafac Compute PARAFAC on a FEEM cube object
coef.feemsplithalf Split-half analysis of PARAFAC models
feem Create a fluorescence excitation-emission matrix object
feem.character Create a fluorescence excitation-emission matrix object
feem.connection Create a fluorescence excitation-emission matrix object
feem.data.frame Create a fluorescence excitation-emission matrix object
feem.matrix Create a fluorescence excitation-emission matrix object
feemcube Build a data cube of FEEMs
feemcube.array Build a data cube of FEEMs
feemcube.list Build a data cube of FEEMs
feemgrid Interpolate FEEMs on a given wavelength grid
feemgrid.feem Interpolate FEEMs on a given wavelength grid
feemgrid.feemcube Interpolate FEEMs on a given wavelength grid
feemgrid.list Interpolate FEEMs on a given wavelength grid
feemife Absorbance-based inner filter effect correction
feemife.feem Absorbance-based inner filter effect correction
feemife.feemcube Absorbance-based inner filter effect correction
feemife.list Absorbance-based inner filter effect correction
feemjackknife Jack-knife outlier detection in PARAFAC models
feemlist Create lists of FEEM objects
feemlist.character Create lists of FEEM objects
feemlist.EEM Create lists of FEEM objects
feemlist.eemlist Create lists of FEEM objects
feemparafac Compute PARAFAC on a FEEM cube object
feems Fluorescence excitation-emission matrices and absorbance spectra
feemscale Rescale FEEM spectra to a given norm and remember the scale factor
feemscale.feem Rescale FEEM spectra to a given norm and remember the scale factor
feemscale.feemcube Rescale FEEM spectra to a given norm and remember the scale factor
feemscale.list Rescale FEEM spectra to a given norm and remember the scale factor
feemscatter Handle scattering signal in FEEMs
feemscatter.feem Handle scattering signal in FEEMs
feemscatter.feemcube Handle scattering signal in FEEMs
feemscatter.list Handle scattering signal in FEEMs
feemsplithalf Split-half analysis of PARAFAC models
fitted.feemparafac Extract fitted PARAFAC values or residuals
marine.colours Marine colours
plot.feem Plot a FEEM object
plot.feemcube Plot a FEEM object
plot.feemjackknife Jack-knife outlier detection in PARAFAC models
plot.feemparafac Compute PARAFAC on a FEEM cube object
plot.feemsplithalf Split-half analysis of PARAFAC models
print.feemsplithalf Split-half analysis of PARAFAC models
residuals.feemparafac Extract fitted PARAFAC values or residuals
write.openfluor Export a PARAFAC model for the OpenFluor database
[.feem Extract or replace parts of FEEM objects
[.feemcube Extract or replace parts of FEEM cubes
[<-.feem Extract or replace parts of FEEM objects
[<-.feemcube Extract or replace parts of FEEM cubes