Trait Matching and Abundance for Predicting Bipartite Networks
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Documentation for package ‘tapnet’ version 0.3
Help Pages
| tapnet-package | tapnet: A package for fitting, and predicting from, bipartite interaction networks. |
| fit_tapnet | Fit the tapnet model to a network |
| functions | Helper functions for tapnet |
| gof_tapnet | Goodness-of-fit of a tapnet fit |
| helper | Helper functions for tapnet |
| humm_abun | Hummingbird-flower networks |
| humm_traits | Hummingbird-flower networks |
| humm_tree | Hummingbird-flower networks |
| internalFunctions | Helper functions for tapnet |
| latent_cor | Helper functions for tapnet |
| loglik_tapnet | Helper functions for tapnet |
| make_tapnet | Constructs an object of type "tapnet" |
| networks | Hummingbird-flower networks |
| param_vec2list | Helper functions for tapnet |
| pems_from_tree | Helper functions for tapnet |
| plant_abun | Hummingbird-flower networks |
| plant_traits | Hummingbird-flower networks |
| plant_tree | Hummingbird-flower networks |
| predict_tapnet | Predict from fitted tapnet to new data |
| refit_params | Helper functions for tapnet |
| select_relevant_pems | Helper functions for tapnet |
| simnetfromtap | Simulates a network from parameters, abundances, traits and phylogeny provided |
| simulate_tapnet | Creates a simulated along with all parameters, abundances, traits and phylogeny used |
| tapnet2df | Convert tapnet object into data.frame |
| Tinoco | Hummingbird-flower networks |
| tmatch | Helper functions for tapnet |
| web_indices | Helper functions for tapnet |