| AA2DACOR |
2D Autocorrelations Descriptors for 20 Amino Acids calculated by Dragon |
| AA3DMoRSE |
3D-MoRSE Descriptors for 20 Amino Acids calculated by Dragon |
| AAACF |
Atom-Centred Fragments Descriptors for 20 Amino Acids calculated by Dragon |
| AABLOSUM100 |
BLOSUM100 Matrix for 20 Amino Acids |
| AABLOSUM45 |
BLOSUM45 Matrix for 20 Amino Acids |
| AABLOSUM50 |
BLOSUM50 Matrix for 20 Amino Acids |
| AABLOSUM62 |
BLOSUM62 Matrix for 20 Amino Acids |
| AABLOSUM80 |
BLOSUM80 Matrix for 20 Amino Acids |
| AABurden |
Burden Eigenvalues Descriptors for 20 Amino Acids calculated by Dragon |
| AAConn |
Connectivity Indices Descriptors for 20 Amino Acids calculated by Dragon |
| AAConst |
Constitutional Descriptors for 20 Amino Acids calculated by Dragon |
| AACPSA |
CPSA Descriptors for 20 Amino Acids calculated by Discovery Studio |
| AADescAll |
All 2D Descriptors for 20 Amino Acids calculated by Dragon |
| AAEdgeAdj |
Edge Adjacency Indices Descriptors for 20 Amino Acids calculated by Dragon |
| AAEigIdx |
Eigenvalue-Based Indices Descriptors for 20 Amino Acids calculated by Dragon |
| AAFGC |
Functional Group Counts Descriptors for 20 Amino Acids calculated by Dragon |
| AAGeom |
Geometrical Descriptors for 20 Amino Acids calculated by Dragon |
| AAGETAWAY |
GETAWAY Descriptors for 20 Amino Acids calculated by Dragon |
| AAindex |
AAindex Data of 544 Physicochemical and Biological Properties for 20 Amino Acids |
| AAInfo |
Information Indices Descriptors for 20 Amino Acids calculated by Dragon |
| AAMetaInfo |
Meta Information for the 20 Amino Acids |
| AAMOE2D |
2D Descriptors for 20 Amino Acids calculated by MOE 2011.10 |
| AAMOE3D |
3D Descriptors for 20 Amino Acids calculated by MOE 2011.10 |
| AAMolProp |
Molecular Properties Descriptors for 20 Amino Acids calculated by Dragon |
| AAPAM120 |
PAM120 Matrix for 20 Amino Acids |
| AAPAM250 |
PAM250 Matrix for 20 Amino Acids |
| AAPAM30 |
PAM30 Matrix for 20 Amino Acids |
| AAPAM40 |
PAM40 Matrix for 20 Amino Acids |
| AAPAM70 |
PAM70 Matrix for 20 Amino Acids |
| AARandic |
Randic Molecular Profiles Descriptors for 20 Amino Acids calculated by Dragon |
| AARDF |
RDF Descriptors for 20 Amino Acids calculated by Dragon |
| AATopo |
Topological Descriptors for 20 Amino Acids calculated by Dragon |
| AATopoChg |
Topological Charge Indices Descriptors for 20 Amino Acids calculated by Dragon |
| AAWalk |
Walk and Path Counts Descriptors for 20 Amino Acids calculated by Dragon |
| AAWHIM |
WHIM Descriptors for 20 Amino Acids calculated by Dragon |
| acc |
Auto Cross Covariance (ACC) for Generating Scales-Based Descriptors of the Same Length |
| crossSetSim |
Parallel Protein Sequence Similarity Calculation Between Two Sets Based on Sequence Alignment (In-Memory Version) |
| crossSetSimDisk |
Parallel Protein Sequence Similarity Calculation Between Two Sets Based on Sequence Alignment (Disk-Based Version) |
| extractAAC |
Amino Acid Composition Descriptor |
| extractAPAAC |
Amphiphilic Pseudo Amino Acid Composition (APseAAC) Descriptor |
| extractBLOSUM |
BLOSUM and PAM Matrix-Derived Descriptors |
| extractCTDC |
CTD Descriptors - Composition |
| extractCTDCClass |
CTD Descriptors - Composition (with customized amino acid classification support) |
| extractCTDD |
CTD Descriptors - Distribution |
| extractCTDDClass |
CTD Descriptors - Distribution (with customized amino acid classification support) |
| extractCTDT |
CTD Descriptors - Transition |
| extractCTDTClass |
CTD Descriptors - Transition (with customized amino acid classification support) |
| extractCTriad |
Conjoint Triad Descriptor |
| extractCTriadClass |
Conjoint Triad Descriptor (with customized amino acid classification support) |
| extractDC |
Dipeptide Composition Descriptor |
| extractDescScales |
Scales-Based Descriptors with 20+ classes of Molecular Descriptors |
| extractFAScales |
Scales-Based Descriptors derived by Factor Analysis |
| extractGeary |
Geary Autocorrelation Descriptor |
| extractMDSScales |
Scales-Based Descriptors derived by Multidimensional Scaling |
| extractMoran |
Moran Autocorrelation Descriptor |
| extractMoreauBroto |
Normalized Moreau-Broto Autocorrelation Descriptor |
| extractPAAC |
Pseudo Amino Acid Composition (PseAAC) Descriptor |
| extractProtFP |
Amino Acid Properties Based Scales Descriptors (Protein Fingerprint) |
| extractProtFPGap |
Amino Acid Properties Based Scales Descriptors (Protein Fingerprint) with Gap Support |
| extractPSSM |
Compute PSSM (Position-Specific Scoring Matrix) for given protein sequence |
| extractPSSMAcc |
Profile-based protein representation derived by PSSM (Position-Specific Scoring Matrix) and auto cross covariance |
| extractPSSMFeature |
Profile-based protein representation derived by PSSM (Position-Specific Scoring Matrix) |
| extractQSO |
Quasi-Sequence-Order (QSO) Descriptor |
| extractScales |
Scales-Based Descriptors derived by Principal Components Analysis |
| extractScalesGap |
Scales-Based Descriptors derived by Principal Components Analysis (with Gap Support) |
| extractSOCN |
Sequence-Order-Coupling Numbers |
| extractTC |
Tripeptide Composition Descriptor |
| getUniProt |
Retrieve Protein Sequences from UniProt by Protein ID |
| OptAA3d |
OptAA3d.sdf - 20 Amino Acids Optimized with MOE 2011.10 (Semiempirical AM1) |
| parGOSim |
Protein Similarity Calculation based on Gene Ontology (GO) Similarity |
| parSeqSim |
Parallel Protein Sequence Similarity Calculation Based on Sequence Alignment (In-Memory Version) |
| parSeqSimDisk |
Parallel Protein Sequence Similarity Calculation Based on Sequence Alignment (Disk-Based Version) |
| protcheck |
Protein sequence amino acid type sanity check |
| protseg |
Protein Sequence Segmentation/Partition |
| readFASTA |
Read Protein Sequences in FASTA Format |
| readPDB |
Read Protein Sequences in PDB Format |
| removeGaps |
Remove or replace gaps from protein sequences. |
| twoGOSim |
Protein Similarity Calculation based on Gene Ontology (GO) Similarity |
| twoSeqSim |
Protein Sequence Alignment for Two Protein Sequences |
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