Baseline Correction of Spectra


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Documentation for package ‘baseline’ version 1.3-1

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A B C D E F G I L M N O P Q R S T

baseline-package Baseline correction

-- A --

algorithm Extraction methods for "baselineAlgTest" objects
algorithm-method Extraction methods for "baselineAlgTest" objects
algorithm-methods Extraction methods for "baselineAlgTest" objects
als Asymmetric Least Squares

-- B --

baseline Baseline correction
baseline-class Class "baseline"
baseline.als Asymmetric Least Squares
baseline.fillPeaks Fill peaks
baseline.irls Iterative Restricted Least Squares
baseline.lowpass Low-pass FFT filter
baseline.medianWindow Median window
baseline.modpolyfit Modified polynomial fitting
baseline.peakDetection Simultaneous Peak Detection and Baseline Correction
baseline.rfbaseline Robust Baseline Estimation
baseline.rollingBall Rolling ball
baseline.shirley Shirley Background Estimation
baseline.TAP TAP
baselineAlg-class Class "baselineAlg"
baselineAlgorithms List of available baseline algorithms
baselineAlgorithmsGUI List of available baseline algorithms for GUI function
baselineAlgResult-class Class "baselineAlgResult"
baselineAlgTest-class Class "baselineAlgTest"
baselineEnv Baseline environment
baselineGUI Interactive plotting tool

-- C --

C1s XPS core line data
custom.baseline Customized baseline correction

-- D --

description Extraction methods for "baselineAlg" objects
description-method Extraction methods for "baselineAlg" objects
description-methods Extraction methods for "baselineAlg" objects
doOptim Optimise several baseline algorithms on a data set

-- E --

extraArgs Extraction methods for "baselineAlgTest" objects
extraArgs-method Extraction methods for "baselineAlgTest" objects
extraArgs-methods Extraction methods for "baselineAlgTest" objects

-- F --

fillPeaks Fill peaks
funcName Extract the "funcName" slot.
funcName-method Extract the "funcName" slot.
funcName-methods Extract the "funcName" slot.

-- G --

getBaseline Functions to extract the components of a "baseline" object
getBaseline-method Class "baseline"
getBaselineEnv Baseline environment
getCall Functions to extract the components of a "baseline" object
getCall-method Class "baseline"
getCorrected Functions to extract the components of a "baseline" object
getCorrected-method Class "baseline"
getOptim Visual tool for setting up optimization
getOptimRes Visual tool for setting up optimization
getSpectra Functions to extract the components of a "baseline" object
getSpectra-method Class "baseline"

-- I --

ind.min Extraction methods specific for "predictionResult" objects
ind.min-method Extraction methods specific for "predictionResult" objects
ind.min-methods Extraction methods specific for "predictionResult" objects
irls Iterative Restricted Least Squares

-- L --

lowpass Low-pass FFT filter

-- M --

medianWindow Median window
milk MALDI-TOF mass spectra
minQualMeas Extraction functions for "predictionResult" or "baselineAlgResult" objects
minQualMeas-method Extraction functions for "predictionResult" or "baselineAlgResult" objects
minQualMeas-methods Extraction functions for "predictionResult" or "baselineAlgResult" objects
modpolyfit Modified polynomial fitting
mvrValstats Optimise several baseline algorithms on a data set

-- N --

name Extraction methods for "baselineAlg" objects
name-method Extraction methods for "baselineAlg" objects
name-methods Extraction methods for "baselineAlg" objects

-- O --

O1s XPS core line data
optimWizard Visual tool for setting up optimization
overall.min Extract the minimum from a baseline optimisation

-- P --

param Extract the "param" slot
param-method Extract the "param" slot
param-methods Extract the "param" slot
param.ind.min Extraction methods for "baselineAlgResult" objects
param.ind.min-method Extraction methods for "baselineAlgResult" objects
param.ind.min-methods Extraction methods for "baselineAlgResult" objects
param.min Extraction functions for "predictionResult" or "baselineAlgResult" objects
param.min-method Extraction functions for "predictionResult" or "baselineAlgResult" objects
param.min-methods Extraction functions for "predictionResult" or "baselineAlgResult" objects
paramName Extraction methods specific for "predictionResult" objects
paramName-method Extraction methods specific for "predictionResult" objects
paramName-methods Extraction methods specific for "predictionResult" objects
peakDetection Simultaneous Peak Detection and Baseline Correction
plot-method Plot method for "baseline" objects
plotBaseline Plot method for "baseline" objects
plotOptim Plotting tool for result objects from optimization
PLSRTest-class Class "PLSRTest"
predictionResult-class Class "predictionResult"
predictionTest-class Class "predictionTest"
putBaselineEnv Baseline environment

-- Q --

qualMeas Extraction functions for "predictionResult" or "baselineAlgResult" objects
qualMeas-method Extraction functions for "predictionResult" or "baselineAlgResult" objects
qualMeas-methods Extraction functions for "predictionResult" or "baselineAlgResult" objects
qualMeas.ind.min Extraction methods for "baselineAlgResult" objects
qualMeas.ind.min-method Extraction methods for "baselineAlgResult" objects
qualMeas.ind.min-methods Extraction methods for "baselineAlgResult" objects
qualMeasName Extraction functions for "predictionResult" or "baselineAlgResult" objects
qualMeasName-method Extraction functions for "predictionResult" or "baselineAlgResult" objects
qualMeasName-methods Extraction functions for "predictionResult" or "baselineAlgResult" objects

-- R --

rfbaseline Robust Baseline Estimation
ridgeRegressionTest-class Class "ridgeRegressionTest"
rollingBall Rolling ball
runTest Run a predictionTest or baselineAlgTest
runTest-method Run a predictionTest or baselineAlgTest
runTest-methods Run a predictionTest or baselineAlgTest

-- S --

shirley Shirley Background Estimation

-- T --

TAP TAP