Find Biomarkers in Two-Class Discrimination Problems

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Documentation for package ‘BioMark’ version 0.4.5

• DESCRIPTION file.
• Package NEWS.

Help Pages

AUC	ROC curves
aux.biom	Auxiliary functions in the biomarker package
biom.options	Set or return options for stability-based biomarker selection
coef.BMark	Get biomarkers discriminating between two classes
gen.data	Simulate data sets
gen.data2	Simulate data sets
get.biom	Get biomarkers discriminating between two classes
get.segments	Subsampling segments
HCthresh	Biomarker thresholding by Higher Criticism
identify.ROC	ROC curves
lasso.coef	Auxiliary functions in the biomarker package
lasso.stab	Auxiliary functions in the biomarker package
lines.ROC	ROC curves
neg.markers	Spike-in metabolomics data for apple extracts
pcr.coef	Auxiliary functions in the biomarker package
pcr.stab	Auxiliary functions in the biomarker package
plot.ROC	ROC curves
pls.coef	Auxiliary functions in the biomarker package
pls.stab	Auxiliary functions in the biomarker package
points.ROC	ROC curves
pos.markers	Spike-in metabolomics data for apple extracts
print.BMark	Get biomarkers discriminating between two classes
print.ROC	ROC curves
pval.pcr	Auxiliary functions in the biomarker package
pval.plsvip	Auxiliary functions in the biomarker package
ROC	ROC curves
ROC.default	ROC curves
roc.value	ROC curves
scalefun	Different forms of scaling
selection	Accessor function to the selected variables of a BioMark object
shrinkt.coef	Auxiliary functions in the biomarker package
shrinkt.stab	Auxiliary functions in the biomarker package
SpikedApple	Spike-in metabolomics data for apple extracts
spikedApples	Metabolomics data on spiked apples
SpikeNeg	Spike-in metabolomics data for apple extracts
SpikePos	Spike-in metabolomics data for apple extracts
studentt.coef	Auxiliary functions in the biomarker package
studentt.stab	Auxiliary functions in the biomarker package
summary.BMark	Get biomarkers discriminating between two classes
traceplot	Plot the coefficient or stability trace for the lasso/elastic net biomarker selection.
vip.coef	Auxiliary functions in the biomarker package
vip.stab	Auxiliary functions in the biomarker package