AUC |
ROC curves |

aux.biom |
Auxiliary functions in the biomarker package |

biom.options |
Set or return options for stability-based biomarker selection |

coef.BMark |
Get biomarkers discriminating between two classes |

gen.data |
Simulate data sets |

gen.data2 |
Simulate data sets |

get.biom |
Get biomarkers discriminating between two classes |

get.segments |
Subsampling segments |

HCthresh |
Biomarker thresholding by Higher Criticism |

identify.ROC |
ROC curves |

lasso.coef |
Auxiliary functions in the biomarker package |

lasso.stab |
Auxiliary functions in the biomarker package |

lines.ROC |
ROC curves |

neg.markers |
Spike-in metabolomics data for apple extracts |

pcr.coef |
Auxiliary functions in the biomarker package |

pcr.stab |
Auxiliary functions in the biomarker package |

plot.ROC |
ROC curves |

pls.coef |
Auxiliary functions in the biomarker package |

pls.stab |
Auxiliary functions in the biomarker package |

points.ROC |
ROC curves |

pos.markers |
Spike-in metabolomics data for apple extracts |

print.BMark |
Get biomarkers discriminating between two classes |

print.ROC |
ROC curves |

pval.pcr |
Auxiliary functions in the biomarker package |

pval.plsvip |
Auxiliary functions in the biomarker package |

ROC |
ROC curves |

ROC.default |
ROC curves |

roc.value |
ROC curves |

scalefun |
Different forms of scaling |

selection |
Accessor function to the selected variables of a BioMark object |

shrinkt.coef |
Auxiliary functions in the biomarker package |

shrinkt.stab |
Auxiliary functions in the biomarker package |

SpikedApple |
Spike-in metabolomics data for apple extracts |

spikedApples |
Metabolomics data on spiked apples |

SpikeNeg |
Spike-in metabolomics data for apple extracts |

SpikePos |
Spike-in metabolomics data for apple extracts |

studentt.coef |
Auxiliary functions in the biomarker package |

studentt.stab |
Auxiliary functions in the biomarker package |

summary.BMark |
Get biomarkers discriminating between two classes |

traceplot |
Plot the coefficient or stability trace for the lasso/elastic net biomarker selection. |

vip.coef |
Auxiliary functions in the biomarker package |

vip.stab |
Auxiliary functions in the biomarker package |