Graphics in the Context of Analyzing High-Throughput Data

Documentation for package ‘wrGraph’ version 1.3.7

Help Pages

.addTextToPoints	Add text to points on plot
.bestLegendLoc	Search best corner of plot for placing for legend This function aims to find best corner for plotting a legend.
.colorByPvalue	Colors based on p-Values
.determFigMargPix	Estimate size/distance of margin to edge of image (png) in pixels
.levIndex	Transform levels into index
.predPointsPix	Predict and return pixel location of points of current plot
.sampNoDeMArrayLM	Locate sample index from index or name of pair-wise comparisons
.serachColName	Search Column Name This function provides help when seraching column names
addBagPlot	Add bagplot to existing plot
checkForLegLoc	Find best place on plot for placing legend
convertPlotCoordPix	Convert points of plot to coordinates in pixels
cumFrqPlot	Cumulative (or sorted) frequency plot (takes columns of 'dat' as separate series)
foldChangeArrow	Add arrow for expected Fold-Change to VolcanoPlot or MA-plot
histW	Histogram (version by WR)
imageW	Display numeric content of matrix as image
legendHist	Add histogram to existing plot
MAplotW	MA-plot (differential intensity versus average intensity)
mouseOverHtmlFile	Create mouse-over interactive html-pages (with links)
partitionPlot	Make matrix for layout to partition plotting area
plotBy2Groups	Separate and plot data by 2 groups
plotLinReg	Plot linear regression and confidence interval of regression
plotPCAw	PCA plot with bag-plot to highlight groups
plotW2Leg	x-y plot with 2 legends
profileAsClu	Plot profiles according to CLustering
staggerdCountsPlot	Staggered Chart for Ploting Counts to Multiple Leveles of the Threshold used
vioplotW	Violin-plots version W
VolcanoPlotW	Volcano-Plot (Statistical Test Outcome versus Relative Change)