Species Distribution Modeling

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Documentation for package ‘dismo’ version 1.3-14

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

dismo-package	Species distribution modeling
acaule	Solanum acaule data
Anguilla_grids	Anguilla australis distribution data
Anguilla_test	Anguilla australis distribution data
Anguilla_train	Anguilla australis distribution data
bioclim	Bioclim
Bioclim-class	Bioclim
bioclim-method	Bioclim
biovars	bioclimatic variables
biovars-method	bioclimatic variables
boxplot-method	Box plot of model evaluation data
calc.deviance	Calculate deviance
circleHull	Circle hull model
CircleHull-class	Circle hull model
circleHull-method	Circle hull model
circles	Circles range
circles-method	Circles range
CirclesRange-class	Circles range
ConvexHull-class	Convex hull model
convHull	Convex hull model
convHull-method	Convex hull model
dcEvaluate	Evaluate by distance class
density	density
density-method	density
dismo	Species distribution modeling
DistModel-class	Class "DistModel"
domain	Domain
Domain-class	Domain
domain-method	Domain
ecocrop	Ecocrop model
ECOCROP-class	Ecocrop model
ECOCROPcrop-class	Ecocrop model
ECOcrops	Ecocrop model
ecolim	Ecolim model
EcoLim-class	Ecolim model
ecolim-method	Ecolim model
evaluate	Model evaluation
evaluateROCR	Model testing with the ROCR package
gbif	Data from GBIF
gbm.fixed	gbm fixed
gbm.holdout	gbm holdout
gbm.interactions	gbm interactions
gbm.perspec	gbm perspective plot
gbm.plot	gbm plot
gbm.plot.fits	gbm plot fitted values
gbm.simplify	gbm simplify
gbm.step	gbm step
geocode	Georeferencing with Google
geoDist	Geographic distance model
geoDist-method	Geographic distance model
GeographicDistance-class	Geographic distance model
geoIDW	Inverse-distance weighted model
geoIDW-method	Inverse-distance weighted model
getCrop	Ecocrop model
gmap	Get a Google map
gridSample	Stratified regular sample on a grid
InvDistWeightModel-class	Inverse-distance weighted model
kfold	k-fold partitioning
mahal	Mahalanobis model
mahal-method	Mahalanobis model
Mahalanobis-class	Mahalanobis model
maxent	Maxent
MaxEnt-class	Maxent
maxent-method	Maxent
MaxEntReplicates-class	Maxent
Mercator	Get a Google map
mess	Multivariate environmental similarity surfaces (MESS)
ModelEvaluation-class	Class "ModelEvaluation"
nicheEquivalency	Niche equivalency
nicheOverlap	Niche overlap
nullRandom	Random null model
pairs	Pair plots
pairs-method	Pair plots
plot-method	Ecocrop model
plot-method	Ecolim model
plot-method	Plot predictor values
plot-method	Plot model evaluation data
points-method	Plot predictor values
pointValues	point values
predict	Distribution model predictions
predict-method	Ecolim model
predict-method	Distribution model predictions
prepareData	Prepare data for model fitting
pwdSample	Pair-wise distance sampling
randomPoints	Random points
RectangularHull-class	Rectangular hull model
rectHull	Rectangular hull model
rectHull-method	Rectangular hull model
response	response plots
response-method	response plots
ssb	Spatial sorting bias
threshold	Find a threshold
threshold-method	Find a threshold
voronoi	Voronoi polygons
voronoi-method	Voronoi polygons
voronoiHull	Voronoi hull model
VoronoiHull-class	Voronoi hull model
voronoiHull-method	Voronoi hull model