Bayesian Purity Model to Estimate Tumor Purity

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Documentation for package ‘BPM’ version 1.0.0

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BPM-package BPM software package
annotGeneNames gene names of probes in 450K array dat
ApiGetDMCs Get TOPK=500 DMCs and non-DMCs using moderated-t test
BayPM Bayesian Purity Model (BPM) Main functions.
BPM BPM software package
estimateNu Estimate noise intensity (nv) for non-DMCs, using maximum likelihood estmiation.
fullSampler Sampling xi and alpha (tumor purity)
goodProbes good probes in packages
simUCEC Simulated data to illustrate datasets in packages