adaptiveGPCA-package |
adaptiveGPCA: A package for structured dimensionality reduction |
adaptivegpca |
Adaptive gPCA |
AntibioticPhyloseq |
Antibiotic time course experiment. |
AntibioticSmall |
A subset of the antibiotic data |
estimateComponents |
Estimate parameters in hierarchical model |
gpca |
gPCA |
gpcaFullFamily |
Make a sequence of ordinations |
inspectTaxonomy |
Shiny gadget for tree/taxonomy inspection |
plot.adaptivegpca |
Plot an adaptivegpca object |
print.adaptivegpca |
Print an adaptivegpca object |
processPhyloseq |
Make the input matrices for adaptive gPCA |
varianceOnEvecs |
Variance along eigenvectors of Q |
visualizeFullFamily |
Shiny gadget for adaptive gPCA |