Age-Depth Modelling using Bayesian Statistics

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Documentation for package ‘rbacon’ version 3.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

A.modelled	Calculate modelled 210Pb
accrate.age	Obtain estimated accumulation rates for any age of a core.
accrate.age.ghost	Plot a core's accumulation rates against calendar time.
accrate.depth	Obtain estimated accumulation rates as for any depth of a core.
accrate.depth.ghost	Plot modelled accumulation rates against the depths of a core.
add.dates	Add dates to age-depth plots
agedepth	Plot an age-depth model
agemodel.it	Extract one age-model iteration
AgesOfEvents	Event probabilities against calendar age
background	calculate probabilities that Pb-210 data have reached background levels
Bacon	Main age-depth modelling function
Bacon.Age.d	Output all ages for a single depth.
Bacon.cleanup	Remove files made to produce the current core's age-depth model.
Bacon.d.Age	Output all depths for a single age.
Bacon.hist	Calculate age distributions of depths.
bacon2clam	Translate Bacon .csv files to clam .csv files.
Baconvergence	Test to identify poorly mixed MCMC runs.
calib.plot	Plot the dates
clam2bacon	Translate clam .csv files to Bacon .csv files.
draw.pbmeasured	Plot the 210Pb data
draw.pbmodelled	Plot the 210Pb data
flux.age.ghost	Plot flux rates for proxies.
proxy.ghost	Proxies analysed along the depths of a core can be plotted as 'proxy-ghost' graphs against calendar time while taking into account chronological uncertainties. Here darker grey indicates more likely calendar ages for specific proxy values.
scissors	Remove the first n iterations.
set.initvals	Set initial values for the Bacon MCMC run.
squeeze	Squeeze some depths of a core
stretch	Stretch some depths of a core
thinner	Thin iterations.
tofu	Bacon for vegans