browse_msig |
Retrieve Gene set Names from MSigDB database Retrieve gene set names from MSigDB database by the gene set name and collection. the search filed is gene name. |
browse_show_collection |
Show collection of MSigDB database |
local_msig |
Query gene set names from local data |
local_version |
Local database version |
msig_detail |
Retrieve detail information of gene set |
msig_download |
Download MsigDB database |
msig_filt |
Filt data by key words Case insensitive |
msig_gene |
Retrieve gene by Gene set Name |
msig_gene.character |
Retrieve gene by Gene set Name |
msig_gene.data.frame |
Retrieve gene by Gene set Name |
msig_geneSymbol |
Retrieve gene by Gene Symbol from MsigDB |
msig_geneSymbol.character |
Retrieve gene by Gene Symbol from MsigDB |
msig_geneSymbol.data.frame |
Retrieve gene by Gene Symbol from MsigDB |
msig_geneSymbol.list |
Retrieve gene by Gene Symbol from MsigDB |
msig_update |
Update local MsigDB database |
msig_version |
version information of MSigDB database |
msig_view |
View data in viewer panel |
NewMsigDB |
Create NewMsigDB object for new versions of MsigDB database |
read_msigdb_xml |
read MSigDB xml data |
related_geneset |
Query related gene sets |
search_msig |
Query MSigDB database by cookie |
search_show_collection |
Show collctions for msigdb_search() |
search_show_contributor |
Show contributor for msigdb_search() |
search_show_organism |
Show organism for msigdb_search() |
show_local_collection |
Show collections of local MsigDB database |
show_local_contributor |
Show contributors of local MsigDB database |
show_local_contributor_org |
Show contributor_orgs of local MsigDB database |
show_local_data |
Show local data used in this package |
show_local_sub_collection |
Show sub_collections of local MsigDB database |
similarity_geneset |
Query similarity gene sets |