Working with 'Sapfluxnet' Project Data

Documentation for package ‘sapfluxnetr’ version 0.1.4

Help Pages

-- A --

ARG_MAZ	ARG_MAZ sapfluxnet site
ARG_TRE	ARG_TRE sapfluxnet site
AUS_CAN_ST2_MIX	AUS_CAN_ST2_MIX sapfluxnet site

-- D --

daily_metrics	Complete metrics wrappers
data_coverage	data coverage
daylight_metrics	Complete metrics wrappers
describe_md_variable	Detailed description of metadata variables
diurnal_centroid	Diurnal centroid calculation

-- F --

filter_sites_by_md

Filter the sites by metadata variable values

-- G --

get_env_data	sfn_data custom get generics
get_env_data-method	sfn_data get methods
get_env_data-method	sfn_data_multi get methods
get_env_data<-	sfn_data replacement generics
get_env_data<--method	sfn_data replacement methods
get_env_flags	sfn_data custom get generics
get_env_flags-method	sfn_data get methods
get_env_flags-method	sfn_data_multi get methods
get_env_flags<-	sfn_data replacement generics
get_env_flags<--method	sfn_data replacement methods
get_env_md	sfn_data custom get generics
get_env_md-method	sfn_data get methods
get_env_md-method	sfn_data_multi get methods
get_env_md<-	sfn_data replacement generics
get_env_md<--method	sfn_data replacement methods
get_plant_md	sfn_data custom get generics
get_plant_md-method	sfn_data get methods
get_plant_md-method	sfn_data_multi get methods
get_plant_md<-	sfn_data replacement generics
get_plant_md<--method	sfn_data replacement methods
get_sapf_data	sfn_data custom get generics
get_sapf_data-method	sfn_data get methods
get_sapf_data-method	sfn_data_multi get methods
get_sapf_data<-	sfn_data replacement generics
get_sapf_data<--method	sfn_data replacement methods
get_sapf_flags	sfn_data custom get generics
get_sapf_flags-method	sfn_data get methods
get_sapf_flags-method	sfn_data_multi get methods
get_sapf_flags<-	sfn_data replacement generics
get_sapf_flags<--method	sfn_data replacement methods
get_site_md	sfn_data custom get generics
get_site_md-method	sfn_data get methods
get_site_md-method	sfn_data_multi get methods
get_site_md<-	sfn_data replacement generics
get_site_md<--method	sfn_data replacement methods
get_si_code	sfn_data custom get generics
get_si_code-method	sfn_data get methods
get_si_code-method	sfn_data_multi get methods
get_si_code<-	sfn_data replacement generics
get_si_code<--method	sfn_data replacement methods
get_solar_timestamp	sfn_data custom get generics
get_solar_timestamp-method	sfn_data get methods
get_solar_timestamp-method	sfn_data_multi get methods
get_solar_timestamp<-	sfn_data replacement generics
get_solar_timestamp<--method	sfn_data replacement methods
get_species_md	sfn_data custom get generics
get_species_md-method	sfn_data get methods
get_species_md-method	sfn_data_multi get methods
get_species_md<-	sfn_data replacement generics
get_species_md<--method	sfn_data replacement methods
get_stand_md	sfn_data custom get generics
get_stand_md-method	sfn_data get methods
get_stand_md-method	sfn_data_multi get methods
get_stand_md<-	sfn_data replacement generics
get_stand_md<--method	sfn_data replacement methods
get_timestamp	sfn_data custom get generics
get_timestamp-method	sfn_data get methods
get_timestamp-method	sfn_data_multi get methods
get_timestamp<-	sfn_data replacement generics
get_timestamp<--method	sfn_data replacement methods
get_timezone	get the timezone of the site

-- I --

initialize-method	Initialize method for sfn_data
initialize-method	Initialize method for sfn_data multi

-- M --

metrics	Complete metrics wrappers
metrics_tidyfier	Build a tidy data frame from the metrics results nested list
midday_metrics	Complete metrics wrappers
monthly_metrics	Complete metrics wrappers

-- N --

nightly_metrics	Complete metrics wrappers
norm_diurnal_centroid	Normalized diurnal centroid calculation

-- P --

predawn_metrics

Complete metrics wrappers

-- R --

read_sfn_data	Read sfn_data from disk
read_sfn_metadata	Read and combine all metadata

-- S --

sfn_data	S4 class for sapfluxnet site data
sfn_data-class	S4 class for sapfluxnet site data
sfn_data_multi	S4 class for sapfluxnet multi-site data
sfn_data_multi-class	S4 class for sapfluxnet multi-site data
sfn_data_multi_validity	Validity method for sfn_data_multi class
sfn_data_validity	Validity method for sfn_data class
sfn_filter	Filter sfn_data by variable/s value
sfn_get_generics	sfn_data custom get generics
sfn_get_methods	sfn_data get methods
sfn_metadata_ex	sfn_metadata cache file for example data (ARG_MAZ, ARG_TRE and AUS_CAN_ST2_MIX)
sfn_metrics	Metrics summary function
sfn_multi_get_methods	sfn_data_multi get methods
sfn_mutate	Mutate variables by function
sfn_mutate_at	Mutate selected columns by function
sfn_plot	plot method for sfn_data class
sfn_replacement_generics	sfn_data replacement generics
sfn_replacement_methods	sfn_data replacement methods
sfn_sites_in_folder	list available sites in a db folder
sfn_vars_to_filter	List all variables that can be used to filter sites
show-method	Show method for sfn_data
show-method	Show method for sfn_data_multi
summarise_by_period	Summaries by period

-- misc --

%>%	Reexporting the pipe operator