Computation of Tree (Im)Balance Indices

---

Documentation for package ‘treebalance’ version 1.2.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

areaPerPairI	Calculation of the area per pair index for rooted trees
auxE_l_X	Auxiliary functions
avgLeafDepI	Calculation of the average leaf depth index for rooted trees
avgVertDep	Calculation of the average vertex depth for rooted trees
B1I	Calculation of the B1 index for rooted trees
B2I	Calculation of the B2 index for rooted trees
cherryI	Calculation of the cherry index for rooted trees
collessI	Calculation of the Colless index for rooted binary trees
collesslikeI	Calculation of the Colless-like indices for rooted trees
colPlaLab	Calculation of the Colijn-Plazzotta rank for rooted binary trees
colPlaLab_inv	Generation of the rooted binary tree corresponding to a given Colijn-Plazzotta rank
cPL_inv	Auxiliary functions
ewCollessI	Calculation of the equal weights Colless index for rooted binary trees
furnasI	Calculation of the Furnas rank for rooted binary trees
furnasI_inv	Calculation of rooted binary tree for tuple (rank, leaf number)
get.subtreesize	Auxiliary functions
getAllAncestors	Auxiliary functions
getAncVec	Auxiliary functions
getDescMatrix	Auxiliary functions
getfurranks	Auxiliary functions
getlca	Auxiliary functions
getNodesOfDepth	Auxiliary functions
getsubtree	Auxiliary functions
IbasedI	Calculation of the I-based indices for rooted trees
is_binary	Auxiliary functions
is_phylo	Auxiliary functions
maxDelW	Calculation of the (modified) maximum difference in widths for a rooted tree
maxDepth	Calculation of the maximum depth of the tree
maxDepthLeaf	Auxiliary functions
maxWidth	Calculation of the maximum width of the tree
mCherryI	Calculation of the modified cherry index for rooted binary trees
mWovermD	Calculation of the maximum width over maximum depth of the tree
rogersI	Calculation of the Rogers J index for rooted binary trees
rQuartetI	Calculation of the rooted quartet index for rooted trees
sackinI	Calculation of the Sackin index for rooted trees
sShapeI	Calculation of the s-shape statistic for rooted trees
stairs1	Calculation of the stairs1 value for rooted binary trees
stairs2	Calculation of the stairs2 value for rooted binary trees
symBucketLexicoSort	Auxiliary functions
symNodesI	Calculation of the symmetry nodes index for rooted binary trees
totCophI	Calculation of the total cophenetic index for rooted trees
totIntPathLen	Calculation of the total internal path length for rooted trees
totPathLen	Calculation of the total path length for rooted trees
treenumber	Auxiliary functions
treenumber_inv	Auxiliary functions
tree_decomposition	Auxiliary functions
tree_merge	Auxiliary functions
varLeafDepI	Calculation of the variance of leaf depths index for rooted trees
wedEth	Wedderburn Etherington numbers (from OEIS)
weighL1dist	Calculation of weighted l1 distance index for rooted binary trees
we_eth	Auxiliary functions