Brain Cell Type Specific Gene Expression Analysis

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Documentation for package ‘BRETIGEA’ version 1.0.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

aba_marker_expression	Normalized FPKM expression data from a subset of the Allen Brain Atlas Aging, Dementia, and TBI study.
aba_pheno_data	Phenotype data from brain samples in the Allen Brain Atlas Aging, Dementia, and TBI study.
adjustBrainCells	Estimate and adjust for brain cell type proportions in bulk expression data.
adjustCells	Adjust for estimated cell type proportions in bulk gene expression data.
brainCells	Estimate brain cell type proportions in bulk expression data with marker genes.
BRETIGEA	BRETIGEA: BRain cEll Type specIfic Gene Expression Analysis
findCells	Find cell type proportions from bulk gene expression data using marker genes.
kelley_df_brain	Marker genes estimated from
markers_df_brain	Marker genes estimated from a meta-analysis of brain cell gene expression data from both humans and mice.
markers_df_human_brain	Marker genes estimated from a meta-analysis of brain cell gene expression data from humans only.
markers_df_mouse_brain	Marker genes estimated from a meta-analysis of brain cell gene expression data from mice only.