Geographic and Taxonomic Occurrence R-Based Scrubbing

[Up] [Top]

Documentation for package ‘gatoRs’ version 1.0.1

Help Pages

basic_locality_clean Locality Cleaning - Remove missing and improbable coordinates
basis_clean Basis Cleaning - Removes records with certain record basis
citation_bellow Cite Data - Get GBIF citations
data_chomp Subset Data - Get species, longitude, and latitude columns
filter_fix_names Used in gators_download() - Filter iDigBio results by scientific name
fix_columns Used in gators_download() - Fill out taxonomic name columns
fix_names Used in gators_download() - Fix taxonomic name capitalization
full_clean Full Cleaning - Wrapper function to speed clean
gators_download Download - Download specimen data from both iDigBio and GBIF
gators_merge Merge Retained Data - Combined original data set with georeferenced or retained records.
get_gbif Used in gators_download() - Download data from the Global Biodiversity Information Facility
get_idigbio Used in gators_download() - Download data from Integrated Digitized Biocollections
needed_records Identify Missing Information - Find records with redacted or missing data
need_to_georeference Identify Missing Information - Find records which lack coordinate information
one_point_per_pixel Spatial Correction - One point per pixel
process_flagged Locality Cleaning - Find possibly problematic occurrence records
remove_duplicates Remove Duplicates - Remove records with identical event dates and coordinates
remove_missing Remove Missing Information - Prepare to merge a data frame with georeferenced and retrieved records
remove_redacted Remove Redacted Information - Remove protected or private records prior to publication
remove_skewed Used in basic_locality_clean() - Removed skewed locality
taxa_clean Taxonomic Cleaning - Filter and resolve taxon names
thin_points Spatial Correction - Spatially thin records