colNormalize |
Normalize each column of the input matrix by the column sum |
colNormalize.default |
Normalize each column of the input matrix by the column sum |
colNormalize.dgCMatrix |
Normalize each column of the input matrix by the column sum |
colNormalize.Seurat |
Normalize each column of the input matrix by the column sum |
colNormalize.SingleCellExperiment |
Normalize each column of the input matrix by the column sum |
plotBinary |
Create binary plots |
plotBinary.default |
Create binary plots |
plotBinary.Seurat |
Create binary plots |
plotBinary.simMat |
Create binary plots |
plotBinary.SingleCellExperiment |
Create binary plots |
plotQuaternary |
Create quaternary simplex plots |
plotQuaternary.default |
Create quaternary simplex plots |
plotQuaternary.Seurat |
Create quaternary simplex plots |
plotQuaternary.simMat |
Create quaternary simplex plots |
plotQuaternary.SingleCellExperiment |
Create quaternary simplex plots |
plotTernary |
Create ternary plots |
plotTernary.default |
Create ternary plots |
plotTernary.Seurat |
Create ternary plots |
plotTernary.simMat |
Create ternary plots |
plotTernary.SingleCellExperiment |
Create ternary plots |
print.plist |
Show plist object produced with plot3D package |
rnaCluster |
Major cell type annotation of the example mouse bone marrow data |
rnaRaw |
Mouse bone marrow scRNAseq example data |
rnaVelo |
Velocity graph of the example mouse bone marrow data |
selectTopFeatures |
Pick top differentially presented features for similarity calculation |
selectTopFeatures.default |
Pick top differentially presented features for similarity calculation |
selectTopFeatures.Seurat |
Pick top differentially presented features for similarity calculation |
selectTopFeatures.SingleCellExperiment |
Pick top differentially presented features for similarity calculation |
show-method |
Show plist object produced with plot3D package |
writeQuaternaryGIF |
Create GIF image for dynamic rotating view of 3D quaternary simplex plot |