Distributions for Ecological Models in 'nimble'

Documentation for package ‘nimbleEcology’ version 0.5.0

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-- D --

dBetaBinom	A beta binomial distribution and beta function for use in 'nimble' models
dBetaBinom_s	A beta binomial distribution and beta function for use in 'nimble' models
dBetaBinom_v	A beta binomial distribution and beta function for use in 'nimble' models
dCJS	Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_ss	Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_sv	Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_vs	Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_vv	Cormack-Jolly-Seber distribution for use in 'nimble' models
dDHMM	Dynamic Hidden Markov Model distribution for use in 'nimble' models
dDHMMo	Dynamic Hidden Markov Model distribution for use in 'nimble' models
dDynOcc	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_ssm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_sss	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_ssv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_svm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_svs	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_svv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vsm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vss	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vsv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vvm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vvs	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vvv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dHMM	Hidden Markov Model distribution for use in 'nimble' models
dHMMo	Hidden Markov Model distribution for use in 'nimble' models
dNmixture	dNmixture distribution for use in 'nimble' models
dNmixtureAD	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBNB_oneObs	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBNB_s	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBNB_v	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBP_oneObs	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBP_s	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BBP_v	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BNB_oneObs	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BNB_s	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_BNB_v	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_s	N-mixture distributions with AD support for use in 'nimble' models
dNmixtureAD_v	N-mixture distributions with AD support for use in 'nimble' models
dNmixture_BBNB_oneObs	dNmixture distribution for use in 'nimble' models
dNmixture_BBNB_s	dNmixture distribution for use in 'nimble' models
dNmixture_BBNB_steps	Internal helper nimbleFunctions for dNmixture distributions
dNmixture_BBNB_v	dNmixture distribution for use in 'nimble' models
dNmixture_BBP_oneObs	dNmixture distribution for use in 'nimble' models
dNmixture_BBP_s	dNmixture distribution for use in 'nimble' models
dNmixture_BBP_steps	Internal helper nimbleFunctions for dNmixture distributions
dNmixture_BBP_v	dNmixture distribution for use in 'nimble' models
dNmixture_BNB_oneObs	dNmixture distribution for use in 'nimble' models
dNmixture_BNB_s	dNmixture distribution for use in 'nimble' models
dNmixture_BNB_steps	Internal helper nimbleFunctions for dNmixture distributions
dNmixture_BNB_v	dNmixture distribution for use in 'nimble' models
dNmixture_s	dNmixture distribution for use in 'nimble' models
dNmixture_steps	Internal helper nimbleFunctions for dNmixture distributions
dNmixture_v	dNmixture distribution for use in 'nimble' models
dOcc	Occupancy distribution suitable for use in 'nimble' models
dOcc_s	Occupancy distribution suitable for use in 'nimble' models
dOcc_v	Occupancy distribution suitable for use in 'nimble' models

-- N --

nimBetaFun	A beta binomial distribution and beta function for use in 'nimble' models
nimNmixPois_logFac	Internal helper nimbleFunctions for dNmixture distributions

-- R --

rBetaBinom_s	A beta binomial distribution and beta function for use in 'nimble' models
rBetaBinom_v	A beta binomial distribution and beta function for use in 'nimble' models
rCJS_ss	Cormack-Jolly-Seber distribution for use in 'nimble' models
rCJS_sv	Cormack-Jolly-Seber distribution for use in 'nimble' models
rCJS_vs	Cormack-Jolly-Seber distribution for use in 'nimble' models
rCJS_vv	Cormack-Jolly-Seber distribution for use in 'nimble' models
rDHMM	Dynamic Hidden Markov Model distribution for use in 'nimble' models
rDHMMo	Dynamic Hidden Markov Model distribution for use in 'nimble' models
rDynOcc_ssm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_sss	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_ssv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_svm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_svs	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_svv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vsm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vss	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vsv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vvm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vvs	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vvv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rHMM	Hidden Markov Model distribution for use in 'nimble' models
rHMMo	Hidden Markov Model distribution for use in 'nimble' models
rNmixtureAD_BBNB_oneObs	N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BBNB_s	N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BBNB_v	N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BBP_oneObs	N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BBP_s	N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BBP_v	N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BNB_oneObs	N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BNB_s	N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_BNB_v	N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_s	N-mixture distributions with AD support for use in 'nimble' models
rNmixtureAD_v	N-mixture distributions with AD support for use in 'nimble' models
rNmixture_BBNB_oneObs	dNmixture distribution for use in 'nimble' models
rNmixture_BBNB_s	dNmixture distribution for use in 'nimble' models
rNmixture_BBNB_v	dNmixture distribution for use in 'nimble' models
rNmixture_BBP_oneObs	dNmixture distribution for use in 'nimble' models
rNmixture_BBP_s	dNmixture distribution for use in 'nimble' models
rNmixture_BBP_v	dNmixture distribution for use in 'nimble' models
rNmixture_BNB_oneObs	dNmixture distribution for use in 'nimble' models
rNmixture_BNB_s	dNmixture distribution for use in 'nimble' models
rNmixture_BNB_v	dNmixture distribution for use in 'nimble' models
rNmixture_s	dNmixture distribution for use in 'nimble' models
rNmixture_v	dNmixture distribution for use in 'nimble' models
rOcc_s	Occupancy distribution suitable for use in 'nimble' models
rOcc_v	Occupancy distribution suitable for use in 'nimble' models