Distributions for Ecological Models in 'nimble'

Documentation for package ‘nimbleEcology’ version 0.4.1

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dBetaBinom	A beta binomial distribution and beta function for use in 'nimble' models
dBetaBinom_One	A beta binomial distribution and beta function for use in 'nimble' models
dCJS	Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_ss	Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_sv	Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_vs	Cormack-Jolly-Seber distribution for use in 'nimble' models
dCJS_vv	Cormack-Jolly-Seber distribution for use in 'nimble' models
dDHMM	Dynamic Hidden Markov Model distribution for use in 'nimble' models
dDHMMo	Dynamic Hidden Markov Model distribution for use in 'nimble' models
dDynOcc	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_ssm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_sss	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_ssv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_svm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_svs	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_svv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vsm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vss	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vsv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vvm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vvs	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dDynOcc_vvv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
dHMM	Hidden Markov Model distribution for use in 'nimble' models
dHMMo	Hidden Markov Model distribution for use in 'nimble' models
dNmixture	N-mixture distribution for use in 'nimble' models
dNmixture_BBNB_oneObs	N-mixture distribution for use in 'nimble' models
dNmixture_BBNB_s	N-mixture distribution for use in 'nimble' models
dNmixture_BBNB_v	N-mixture distribution for use in 'nimble' models
dNmixture_BBP_oneObs	N-mixture distribution for use in 'nimble' models
dNmixture_BBP_s	N-mixture distribution for use in 'nimble' models
dNmixture_BBP_v	N-mixture distribution for use in 'nimble' models
dNmixture_BNB_oneObs	N-mixture distribution for use in 'nimble' models
dNmixture_BNB_s	N-mixture distribution for use in 'nimble' models
dNmixture_BNB_v	N-mixture distribution for use in 'nimble' models
dNmixture_s	N-mixture distribution for use in 'nimble' models
dNmixture_v	N-mixture distribution for use in 'nimble' models
dOcc	Occupancy distribution suitable for use in 'nimble' models
dOcc_s	Occupancy distribution suitable for use in 'nimble' models
dOcc_v	Occupancy distribution suitable for use in 'nimble' models
nimBetaFun	A beta binomial distribution and beta function for use in 'nimble' models
nimNmixPois_logFac	Helper function for fast N-mixture calculation
rBetaBinom	A beta binomial distribution and beta function for use in 'nimble' models
rBetaBinom_One	A beta binomial distribution and beta function for use in 'nimble' models
rCJS_ss	Cormack-Jolly-Seber distribution for use in 'nimble' models
rCJS_sv	Cormack-Jolly-Seber distribution for use in 'nimble' models
rCJS_vs	Cormack-Jolly-Seber distribution for use in 'nimble' models
rCJS_vv	Cormack-Jolly-Seber distribution for use in 'nimble' models
rDHMM	Dynamic Hidden Markov Model distribution for use in 'nimble' models
rDHMMo	Dynamic Hidden Markov Model distribution for use in 'nimble' models
rDynOcc_ssm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_sss	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_ssv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_svm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_svs	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_svv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vsm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vss	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vsv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vvm	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vvs	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rDynOcc_vvv	Dynamic occupancy distribution for use in 'nimble' models 'dDynOcc_' and 'rDynOcc_' provide dynamic occupancy model distributions that can be used directly from R or in 'nimble' models.
rHMM	Hidden Markov Model distribution for use in 'nimble' models
rHMMo	Hidden Markov Model distribution for use in 'nimble' models
rNmixture_BBNB_oneObs	N-mixture distribution for use in 'nimble' models
rNmixture_BBNB_s	N-mixture distribution for use in 'nimble' models
rNmixture_BBNB_v	N-mixture distribution for use in 'nimble' models
rNmixture_BBP_oneObs	N-mixture distribution for use in 'nimble' models
rNmixture_BBP_s	N-mixture distribution for use in 'nimble' models
rNmixture_BBP_v	N-mixture distribution for use in 'nimble' models
rNmixture_BNB_oneObs	N-mixture distribution for use in 'nimble' models
rNmixture_BNB_s	N-mixture distribution for use in 'nimble' models
rNmixture_BNB_v	N-mixture distribution for use in 'nimble' models
rNmixture_s	N-mixture distribution for use in 'nimble' models
rNmixture_v	N-mixture distribution for use in 'nimble' models
rOcc_s	Occupancy distribution suitable for use in 'nimble' models
rOcc_v	Occupancy distribution suitable for use in 'nimble' models