Simulate and Test Marker Dosage for Dominant Markers in Autopolyploids

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Documentation for package ‘polySegratio’ version 0.2-5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

polySegratio-package	Segregation Ratios for Autoployploids
addMisclass	Misclassifies marker data in objects of class autoMarker or autoCross
addMissing	Adds missing data to objects of class autoMarker or autoCross
autoFill	Automatically fill out blanks of a vector with the preceding label
divide.autoMarkers	Divide markers by parental type
divideAutoMarkers	S3 class divideAutoMarkers
expected.segRatio	Compute theoretical segregation proportions for regular autopolyploids
makeLabel	Generate labels from two columns where blanks in first column are replaced by preceding non-blank label
plot.segRatio	Plot segregation ratios for either observed or simulated marker data
plot.simAutoCross	Plot segregation ratios for either observed or simulated marker data
plot.simAutoMarkers	Plot segregation ratios for either observed or simulated marker data
polySegratio	Segregation Ratios for Autoployploids
print.divideAutoMarkers	Print objects of class simAutoMarkers
print.segRatio	Print segregation ratios
print.simAutoCross	Print objects of class simAutoMarkers
print.simAutoMarkers	Print objects of class simAutoMarkers
print.testSegRatio	Print objects of class testSegRatio
segRatio	S3 class segRatio
segregationRatios	Compute observed segregation proportions for dominant markers in autopolyploids
sim.autoCross	Simulate dominant markers for an autopolyploid cross for all parental types
sim.autoMarkers	Simulates dominant markers from an autopolyploid cross
simAutoCross	S3 class simAutoCross
simAutoMarkers	S3 class simAutoMarkers
test.segRatio	Classic tests for assessing marker dosage in autopolyploids
testSegRatio	S3 class testSegRatio