Small Helpers and Tricks for Epidemics Analysis
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘epitrix’ version 0.4.0
Help Pages
| AR2R0 | Title Calculate basic reproduction number from attack rate |
| clean_labels | Standardise labels |
| empirical_incubation_dist | Extract empirical incubation period distribution from linelist data |
| fit_discrete | Fit discretised distributions using ML |
| fit_disc_gamma | Fit discretised distributions using ML |
| fit_gamma_incubation_dist | Fit discrite gamma distribution to incubation periods |
| gamma_log_likelihood | Reparameterise Gamma distributions |
| gamma_mucv2shapescale | Reparameterise Gamma distributions |
| gamma_shapescale2mucv | Reparameterise Gamma distributions |
| hash_names | Anonymise data using scrypt |
| lm2R0_sample | Transform a growth rate into a reproduction number |
| R02AR | Title Calculate attack rate from basic reproduction number |
| R02herd_immunity_threshold | Title Calculate herd immunity threshold from basic reproduction number |
| r2R0 | Transform a growth rate into a reproduction number |
| sim_linelist | Simulate simple linelist data |