Easy Visualization of ABH Genotypes
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Documentation for package ‘ABHgenotypeR’ version 1.0.1
Help Pages
| ABHgenotypeR-package | ABHgenotypeR: A package for easy visualization and manipulating of ABH genotypes. |
| ABHgenotypeR | ABHgenotypeR: A package for easy visualization and manipulating of ABH genotypes. |
| correctStretches | Correct short miscalled stretches based on flanking alleles. |
| correctUndercalledHets | Correct undercalled heterozygous sites based on flanking alleles. |
| imputeByFlanks | Impute missing genotypes based on flanking alleles |
| plotAlleleFreq | Plot the parental allele frequencies along the chromosomes. |
| plotCompareGenos | Compare to genotype matrices |
| plotGenos | Plot graphical genotypes. |
| plotMarkerDensity | Plot the marker density along the chromosomes. |
| readABHgenotypes | Read in the output of the genosToABH plugin. |
| reportGenos | Report the total and relative number of each allele in a genotype object. |
| writeABHgenotypes | Export a genotype list to a .csv file. |