ABHgenotypeR-package |
ABHgenotypeR: A package for easy visualization and manipulating of ABH genotypes. |
ABHgenotypeR |
ABHgenotypeR: A package for easy visualization and manipulating of ABH genotypes. |
correctStretches |
Correct short miscalled stretches based on flanking alleles. |
correctUndercalledHets |
Correct undercalled heterozygous sites based on flanking alleles. |
imputeByFlanks |
Impute missing genotypes based on flanking alleles |
plotAlleleFreq |
Plot the parental allele frequencies along the chromosomes. |
plotCompareGenos |
Compare to genotype matrices |
plotGenos |
Plot graphical genotypes. |
plotMarkerDensity |
Plot the marker density along the chromosomes. |
readABHgenotypes |
Read in the output of the genosToABH plugin. |
reportGenos |
Report the total and relative number of each allele in a genotype object. |
writeABHgenotypes |
Export a genotype list to a .csv file. |