AraMetLeaves |
A metabolite data set from Arabidopsis leaves by GC-TOF/MS |
AraMetRoots |
A metabolite data set from Arabidopsis roots by GC-TOF/MS |
cluster.molecule |
Hierarchical clustering of molecules |
comp.2.cc.fdr |
Export differential correlations between two conditions |
compcorr |
Compare two correlation coefficients |
cor.dist |
Additional distance functions correlation distance (1-r) |
cor2.test |
Correlation Test |
generate_g |
Generating graph from data matrix |
get.eigen.molecule |
Get eigen molecule |
get.eigen.molecule.graph |
Getting graph from eigengene module list |
get.lfdr |
Getting local false discovery rate (lfdr) |
get.min.max |
Get minimum and maximum |
plotClusterMolecules |
Plot cluster molecules |
plotDiffCorrGroup |
Plot DiffCorr group |
scalingMethods |
scalingMethods |
uncent.cor2dist |
Additional distance functions correlation distance (uncentered) |
uncent.cordist |
Calculating all pairwise distances using correlation distance |
write.modules |
Writing modules into a text file |