Pathway Testing for Longitudinal Omics

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Documentation for package ‘SlaPMEG’ version 1.0.1

• DESCRIPTION file.

Help Pages

multslapmeg	Testing multiple pathways using SLaPMEG (shared latent process mixed effects model and Globaltest) for longitudinal Omics data
pairsetinval	Estimating initial values for paired slapmeg based on seperate lme models
pairslapmeg	Testing pathways using SLaPMEG (shared latent process mixed effects model and Globaltest) for longitudinal Omics data based on pairwise estimation approach (a computational solution for latrge pathways)
plotslapmeg	Plot the estimated random effects from SLaPMEG seperated for the study groups
print.mslapmeg	Print objects from 'multslapmeg'
print.slapmeg	Print objects from 'slapmeg'
setinval	Estimating initial values for slapmeg based on seperate lme models
simslapmeg	Simulate longitudinal data based on a shared latent process mixed effects model (SlaPMEG)
slapGT	Run step II via globaltest package
slapmeg	Testing pathways using SLaPMEG (shared latent process mixed effects model and Globaltest) for longitudinal Omics data
summary.mslapmeg	Summary of 'slapmeg' objects
summary.slapmeg	Summary of 'slapmeg' objects