Compute and Visualize Bivariate Associations

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Documentation for package ‘MVisAGe’ version 0.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cn.mat	DNA copy number data from 98 head and neck squamous cell carcinoma (HNSC) patients
cn.region.heatmap	A Function for Creating a Heatmap of DNA Copy Number Data
corr.compute	A Function for Computing a Vector of Pearson Correlation Coefficients
corr.list.compute	A Function for Creating a List of Pearson Correlation Coefficients
data.prep	A Function for Preparing mRNAseq and Copy Number Data Matrices
exp.mat	Gene expression data from 100 head and neck squamous cell carcinoma (HNSC) patients
gene.annot	Gene annotation data (hg38)
perm.significance	A Function for Computing a Vector of Pearson Correlation Coefficients
perm.significance.list.compute	A Function for Creating a List of Pearson Correlation Coefficients
sample.annot	Sample annotation data
smooth.genome.plot	A Function for Plotting Smoothed Pearson Correlation Coefficients Across Multiple Chromosomes
smooth.region.plot	A Function for Plotting Smoothed Pearson Correlation Coefficients Genomewide
tcga.cn.convert	A Function for Reformatting TCGA DNA Copy Number Matrices
tcga.exp.convert	A Function for Reformatting TCGA mRNA Expression Matrices
unsmooth.region.plot	A Function for Plotting Pearson Correlation Coefficients in a Given Genomic Region