Utilities for Nonlinear Regression and Repeated Measurements Models

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Documentation for package ‘rmutil’ version 1.1.10

• DESCRIPTION file.
• Package NEWS.

Help Pages

A C D F G I L M N P Q R T U V W misc

-- A --

as.data.frame	Methods for response, tccov, tvcov, and repeated Data Objects
as.data.frame.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
as.data.frame.response	Methods for response, tccov, tvcov, and repeated Data Objects
as.data.frame.tccov	Methods for response, tccov, tvcov, and repeated Data Objects
as.data.frame.tvcov	Methods for response, tccov, tvcov, and repeated Data Objects
as.matrix	Methods for response, tccov, tvcov, and repeated Data Objects
as.matrix.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
as.matrix.response	Methods for response, tccov, tvcov, and repeated Data Objects
as.matrix.tccov	Methods for response, tccov, tvcov, and repeated Data Objects
as.matrix.tvcov	Methods for response, tccov, tvcov, and repeated Data Objects

-- C --

capply	A Fast Simplified Version of 'tapply'
coef.gnlm	Methods for response, tccov, tvcov, and repeated Data Objects
contr.mean	Contrast Matrix for Constraints about the Mean
covariates	Methods for response, tccov, tvcov, and repeated Data Objects
covariates.formulafn	Methods for formulafn Functions
covariates.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
covariates.tccov	Methods for response, tccov, tvcov, and repeated Data Objects
covariates.tvcov	Methods for response, tccov, tvcov, and repeated Data Objects
covind	Methods for response, tccov, tvcov, and repeated Data Objects
covind.default	Methods for response, tccov, tvcov, and repeated Data Objects

-- D --

DataMethods	Methods for response, tccov, tvcov, and repeated Data Objects
dbetabinom	Beta Binomial Distribution
dboxcox	Box-Cox Distribution
dburr	Burr Distribution
dconsul	Consul Distribution
ddoublebinom	Double Binomial Distribution
ddoublepois	Double Poisson Distribution
delta	Methods for response, tccov, tvcov, and repeated Data Objects
delta.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
delta.response	Methods for response, tccov, tvcov, and repeated Data Objects
description	Methods for response, tccov, tvcov, and repeated Data Objects
description.default	Methods for response, tccov, tvcov, and repeated Data Objects
description.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
deviance.gnlm	Methods for response, tccov, tvcov, and repeated Data Objects
df.residual.gnlm	Methods for response, tccov, tvcov, and repeated Data Objects
dftorep	Transform a Dataframe to a repeated Object
dgammacount	Gamma Count Distribution
dgextval	Generalized Extreme Value Distribution
dggamma	Generalized Gamma Distribution
dginvgauss	Generalized Inverse Gaussian Distribution
dglogis	Generalized Logistic Distribution
dgweibull	Generalized Weibull Distribution
dhjorth	Hjorth Distribution
dinvgauss	Inverse Gaussian Distribution
dlaplace	Laplace Distribution
dlevy	Levy Distribution
dmultbinom	Multiplicative Binomial Distribution
dmultpois	Multiplicative Poisson Distribution
dpareto	Pareto Distribution
dpowexp	Power Exponential Distribution
dpvfpois	Power Variance Function Poisson Distribution
dsimplex	Simplex Distribution
dskewlaplace	Skew Laplace Distribution
dtwosidedpower	Two-Sided Power Distribution

-- F --

finterp	Formula Interpreter
finterp.data.frame	Formula Interpreter
finterp.default	Formula Interpreter
finterp.repeated	Formula Interpreter
finterp.tccov	Formula Interpreter
finterp.tvcov	Formula Interpreter
fmobj	Object Finder
fnenvir	Check Covariates and Parameters of a Function
fnenvir.data.frame	Check Covariates and Parameters of a Function
fnenvir.default	Check Covariates and Parameters of a Function
fnenvir.repeated	Check Covariates and Parameters of a Function
fnenvir.tccov	Check Covariates and Parameters of a Function
fnenvir.tvcov	Check Covariates and Parameters of a Function
formula	Methods for response, tccov, tvcov, and repeated Data Objects
formula.formulafn	Methods for formulafn Functions
formula.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
formula.tccov	Methods for response, tccov, tvcov, and repeated Data Objects

-- G --

gauss.hermite	Calculate Gauss-Hermite Quadrature Points
gettvc	Find the Most Recent Value of a Time-varying Covariate Before Each Observed Response

-- I --

int	Vectorized Numerical Integration
int2	Vectorized Two-dimensional Numerical Integration
iprofile	Produce Individual Time Profiles for Plotting
iprofile.default	Produce Individual Time Profiles for Plotting

-- L --

lin.diff.eqn	Solution of Autonomous Linear Differential Equations
lvna	Create a repeated Object, Leaving NAs

-- M --

mexp	Matrix Exponentiation
model	Methods for formulafn Functions
model.formulafn	Methods for formulafn Functions
mprofile	Produce Marginal Time Profiles for Plotting
mprofile.default	Produce Marginal Time Profiles for Plotting
mu1.0o1c	Pharmacokinetic Compartment Models
mu1.1o1c	Pharmacokinetic Compartment Models
mu1.1o2c	Pharmacokinetic Compartment Models
mu1.1o2cc	Pharmacokinetic Compartment Models
mu1.1o2cl	Pharmacokinetic Compartment Models
mu2.0o1c	Pharmacokinetic Compartment Models
mu2.0o1cfp	Pharmacokinetic Compartment Models
mu2.0o2c1	Pharmacokinetic Compartment Models
mu2.0o2c1fp	Pharmacokinetic Compartment Models
mu2.0o2c2	Pharmacokinetic Compartment Models
mu2.0o2c2fp	Pharmacokinetic Compartment Models
mu2.1o1c	Pharmacokinetic Compartment Models
mu2.1o1cfp	Pharmacokinetic Compartment Models

-- N --

names	Methods for response, tccov, tvcov, and repeated Data Objects
names.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
names.response	Methods for response, tccov, tvcov, and repeated Data Objects
names.tccov	Methods for response, tccov, tvcov, and repeated Data Objects
names.tvcov	Methods for response, tccov, tvcov, and repeated Data Objects
nesting	Methods for response, tccov, tvcov, and repeated Data Objects
nesting.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
nesting.response	Methods for response, tccov, tvcov, and repeated Data Objects
nobs	Methods for response, tccov, tvcov, and repeated Data Objects
nobs.data.frame	Methods for response, tccov, tvcov, and repeated Data Objects
nobs.default	Methods for response, tccov, tvcov, and repeated Data Objects
nobs.response	Methods for response, tccov, tvcov, and repeated Data Objects
nobs.tvcov	Methods for response, tccov, tvcov, and repeated Data Objects

-- P --

parameters	Methods for formulafn Functions
parameters.formulafn	Methods for formulafn Functions
pbetabinom	Beta Binomial Distribution
pboxcox	Box-Cox Distribution
pburr	Burr Distribution
pconsul	Consul Distribution
pdoublebinom	Double Binomial Distribution
pdoublepois	Double Poisson Distribution
pgammacount	Gamma Count Distribution
pgextval	Generalized Extreme Value Distribution
pggamma	Generalized Gamma Distribution
pginvgauss	Generalized Inverse Gaussian Distribution
pglogis	Generalized Logistic Distribution
pgweibull	Generalized Weibull Distribution
phjorth	Hjorth Distribution
pinvgauss	Inverse Gaussian Distribution
pkpd	Pharmacokinetic Compartment Models
plaplace	Laplace Distribution
plevy	Levy Distribution
plot.iprofile	Produce Individual Time Profiles for Plotting
plot.mprofile	Produce Marginal Time Profiles for Plotting
plot.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
plot.residuals	Plot Residuals
plot.response	Methods for response, tccov, tvcov, and repeated Data Objects
pmultbinom	Multiplicative Binomial Distribution
pmultpois	Multiplicative Poisson Distribution
ppareto	Pareto Distribution
ppowexp	Power Exponential Distribution
ppvfpois	Power Variance Function Poisson Distribution
print.fmobj	Methods for response, tccov, tvcov, and repeated Data Objects
print.formulafn	Methods for formulafn Functions
print.gnlm	Methods for response, tccov, tvcov, and repeated Data Objects
print.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
print.response	Methods for response, tccov, tvcov, and repeated Data Objects
print.tccov	Methods for response, tccov, tvcov, and repeated Data Objects
print.tvcov	Methods for response, tccov, tvcov, and repeated Data Objects
psimplex	Simplex Distribution
pskewlaplace	Skew Laplace Distribution
ptwosidedpower	Two-Sided Power Distribution

-- Q --

qbetabinom	Beta Binomial Distribution
qboxcox	Box-Cox Distribution
qburr	Burr Distribution
qconsul	Consul Distribution
qdoublebinom	Double Binomial Distribution
qdoublepois	Double Poisson Distribution
qgammacount	Gamma Count Distribution
qgextval	Generalized Extreme Value Distribution
qggamma	Generalized Gamma Distribution
qginvgauss	Generalized Inverse Gaussian Distribution
qglogis	Generalized Logistic Distribution
qgweibull	Generalized Weibull Distribution
qhjorth	Hjorth Distribution
qinvgauss	Inverse Gaussian Distribution
qlaplace	Laplace Distribution
qlevy	Levy Distribution
qmultbinom	Multiplicative Binomial Distribution
qmultpois	Multiplicative Poisson Distribution
qpareto	Pareto Distribution
qpowexp	Power Exponential Distribution
qpvfpois	Power Variance Function Poisson Distribution
qsimplex	Simplex Distribution
qskewlaplace	Skew Laplace Distribution
qtwosidedpower	Two-Sided Power Distribution

-- R --

rbetabinom	Beta Binomial Distribution
rboxcox	Box-Cox Distribution
rburr	Burr Distribution
rconsul	Consul Distribution
rdoublebinom	Double Binomial Distribution
rdoublepois	Double Poisson Distribution
read.list	Read a List of Matrices from a File for Unbalanced Repeated Measurements
read.rep	Read a Rectangular Data Set from a File to Create a repeated Object
read.surv	Read a List of Matrices from a File for Repeated Times to Events
response	Methods for response, tccov, tvcov, and repeated Data Objects
response.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
response.response	Methods for response, tccov, tvcov, and repeated Data Objects
resptype	Methods for response, tccov, tvcov, and repeated Data Objects
resptype.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
resptype.response	Methods for response, tccov, tvcov, and repeated Data Objects
restovec	Create a response Object
rgammacount	Gamma Count Distribution
rgextval	Generalized Extreme Value Distribution
rggamma	Generalized Gamma Distribution
rginvgauss	Generalized Inverse Gaussian Distribution
rglogis	Generalized Logistic Distribution
rgweibull	Generalized Weibull Distribution
rhjorth	Hjorth Distribution
rinvgauss	Inverse Gaussian Distribution
rlaplace	Laplace Distribution
rlevy	Levy Distribution
rmna	Create a repeated Object, Removing NAs
rmultbinom	Multiplicative Binomial Distribution
rmultpois	Multiplicative Poisson Distribution
rmutil	Utilities for Repeated Measurements Library
rpareto	Pareto Distribution
rpowexp	Power Exponential Distribution
rpvfpois	Power Variance Function Poisson Distribution
rsimplex	Simplex Distribution
rskewlaplace	Skew Laplace Distribution
rtwosidedpower	Two-Sided Power Distribution
runge.kutta	Runge-Kutta Method for Solving Differential Equations

-- T --

tcctomat	Create a Time-constant, Inter-individual Covariate (tccov) Object
times	Methods for response, tccov, tvcov, and repeated Data Objects
times.default	Methods for response, tccov, tvcov, and repeated Data Objects
times.response	Methods for response, tccov, tvcov, and repeated Data Objects
transform	Methods for response, tccov, tvcov, and repeated Data Objects
transform.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
transform.response	Methods for response, tccov, tvcov, and repeated Data Objects
transform.tccov	Methods for response, tccov, tvcov, and repeated Data Objects
transform.tvcov	Methods for response, tccov, tvcov, and repeated Data Objects
tvctomat	Create a Time-varying, Intra-individual Covariate (tvcov) Object

-- U --

units	Methods for response, tccov, tvcov, and repeated Data Objects
units.default	Methods for response, tccov, tvcov, and repeated Data Objects
units.repeated	Methods for response, tccov, tvcov, and repeated Data Objects

-- V --

vcov.gnlm

Methods for response, tccov, tvcov, and repeated Data Objects

-- W --

weights	Methods for response, tccov, tvcov, and repeated Data Objects
weights.gnlm	Methods for response, tccov, tvcov, and repeated Data Objects
weights.repeated	Methods for response, tccov, tvcov, and repeated Data Objects
weights.response	Methods for response, tccov, tvcov, and repeated Data Objects
wr	Find the Response Vector and Design Matrix for a W&R Model Formula

-- misc --

%^%	Power of a Matrix