'ggplot2' Based Publication Ready Plots


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Documentation for package ‘ggpubr’ version 0.5.0

Help Pages

A B C D F G L M N P R S T X Y

-- A --

add_summary Add Summary Statistics onto a ggplot.
annotate_figure Annotate Arranged Figure
as_ggplot Storing grid.arrange() arrangeGrob() and plots
as_npc Convert Character Coordinates into Normalized Parent Coordinates (NPC)
as_npcx Convert Character Coordinates into Normalized Parent Coordinates (NPC)
as_npcy Convert Character Coordinates into Normalized Parent Coordinates (NPC)
axis_scale Change Axis Scale: log2, log10 and more

-- B --

background_image Add Background Image to ggplot2
bgcolor Change ggplot Panel Background Color
border Set ggplot Panel Border Line

-- C --

change_palette Set Color Palette
clean_table_theme Publication ready theme
clean_theme Publication ready theme
colnames_style Draw a Textual Table
color_palette Set Color Palette
compare_means Comparison of Means
create_aes Create Aes Mapping from a List

-- D --

desc_statby Descriptive statistics by groups
diff_express Differential gene expression analysis results
drawDetails.splitText Draw a Paragraph of Text

-- F --

facet Facet a ggplot into Multiple Panels
fill_palette Set Color Palette
font Change the Appearance of Titles and Axis Labels

-- G --

gene_citation Gene Citation Index
geom_bracket Add Brackets with Labels to a GGPlot
geom_exec Execute ggplot2 functions
geom_pwc Add Pairwise Comparisons P-values to a GGPlot
get_breaks Easy Break Creation for Numeric Axes
get_coord Checks and Returns Data Coordinates from Multiple Input Options
get_legend Extract Legends from a ggplot object
get_palette Generate Color Palettes
ggadd Add Summary Statistics or a Geom onto a ggplot
ggarrange Arrange Multiple ggplots
ggballoonplot Ballon plot
ggbarplot Bar plot
ggboxplot Box plot
ggdensity Density plot
ggdonutchart Donut chart
ggdotchart Cleveland's Dot Plots
ggdotplot Dot plot
ggecdf Empirical cumulative density function
ggerrorplot Visualizing Error
ggexport Export ggplots
gghistogram Histogram plot
ggline Line plot
ggmaplot MA-plot from means and log fold changes
ggpaired Plot Paired Data
ggpar Graphical parameters
ggparagraph Draw a Paragraph of Text
ggpie Pie chart
ggpubr_args ggpubr General Arguments Description
ggpubr_options Global Options for GGPubr
ggqqplot QQ Plots
ggscatter Scatter plot
ggscatterhist Scatter Plot with Marginal Histograms
ggstripchart Stripcharts
ggsummarystats GGPLOT with Summary Stats Table Under the Plot
ggsummarytable GGPLOT with Summary Stats Table Under the Plot
ggtext Text
ggtexttable Draw a Textual Table
ggviolin Violin plot
gradient_color Set Gradient Color
gradient_fill Set Gradient Color
grids Add Grids to a ggplot

-- L --

labs_pubr Publication ready theme

-- M --

mean_ci Add Summary Statistics onto a ggplot.
mean_range Add Summary Statistics onto a ggplot.
mean_sd Add Summary Statistics onto a ggplot.
mean_se_ Add Summary Statistics onto a ggplot.
median_hilow_ Add Summary Statistics onto a ggplot.
median_iqr Add Summary Statistics onto a ggplot.
median_mad Add Summary Statistics onto a ggplot.
median_q1q3 Add Summary Statistics onto a ggplot.
median_range Add Summary Statistics onto a ggplot.

-- N --

npc_to_data_coord Convert NPC to Data Coordinates

-- P --

print.ggscatterhist Scatter Plot with Marginal Histograms
print.ggsummarystats GGPLOT with Summary Stats Table Under the Plot
print.ggsummarystats_list GGPLOT with Summary Stats Table Under the Plot

-- R --

rotate Rotate a ggplot Horizontally
rotate_axis_text Rotate Axes Text
rotate_x_text Rotate Axes Text
rotate_y_text Rotate Axes Text
rownames_style Draw a Textual Table
rremove Remove a ggplot Component

-- S --

set_palette Set Color Palette
show_line_types Line types available in R
show_point_shapes Point shapes available in R
stat_anova_test Add Anova Test P-values to a GGPlot
stat_bracket Add Brackets with Labels to a GGPlot
stat_central_tendency Add Central Tendency Measures to a GGPLot
stat_chull Plot convex hull of a set of points
stat_compare_means Add Mean Comparison P-values to a ggplot
stat_conf_ellipse Plot confidence ellipses.
stat_cor Add Correlation Coefficients with P-values to a Scatter Plot
stat_friedman_test Add Friedman Test P-values to a GGPlot
stat_kruskal_test Add Kruskal-Wallis Test P-values to a GGPlot
stat_mean Draw group mean points
stat_overlay_normal_density Overlay Normal Density Plot
stat_pvalue_manual Add Manually P-values to a ggplot
stat_pwc Add Pairwise Comparisons P-values to a GGPlot
stat_regline_equation Add Regression Line Equation and R-Square to a GGPLOT.
stat_stars Add Stars to a Scatter Plot
stat_welch_anova_test Add Welch One-Way ANOVA Test P-values to a GGPlot

-- T --

table_cell_bg Draw a Textual Table
table_cell_font Draw a Textual Table
tab_add_border Draw a Textual Table
tab_add_footnote Draw a Textual Table
tab_add_hline Draw a Textual Table
tab_add_title Draw a Textual Table
tab_add_vline Draw a Textual Table
tab_cell_crossout Draw a Textual Table
tab_ncol Draw a Textual Table
tab_nrow Draw a Textual Table
tbody_add_border Draw a Textual Table
tbody_style Draw a Textual Table
text_grob Create a Text Graphical object
thead_add_border Draw a Textual Table
theme_classic2 Publication ready theme
theme_cleveland Cleveland's Dot Plots
theme_pubclean Publication ready theme
theme_pubr Publication ready theme
theme_transparent Create a ggplot with Transparent Background
ttheme Draw a Textual Table

-- X --

xscale Change Axis Scale: log2, log10 and more

-- Y --

yscale Change Axis Scale: log2, log10 and more