'ggplot2' Based Publication Ready Plots

Documentation for package ‘ggpubr’ version 0.6.0

Help Pages

-- A --

add_summary	Add Summary Statistics onto a ggplot.
annotate_figure	Annotate Arranged Figure
as_ggplot	Storing grid.arrange() arrangeGrob() and plots
as_npc	Convert Character Coordinates into Normalized Parent Coordinates (NPC)
as_npcx	Convert Character Coordinates into Normalized Parent Coordinates (NPC)
as_npcy	Convert Character Coordinates into Normalized Parent Coordinates (NPC)
axis_scale	Change Axis Scale: log2, log10 and more

-- B --

background_image	Add Background Image to ggplot2
bgcolor	Change ggplot Panel Background Color
border	Set ggplot Panel Border Line

-- C --

change_palette	Set Color Palette
clean_table_theme	Publication ready theme
clean_theme	Publication ready theme
colnames_style	Draw a Textual Table
color_palette	Set Color Palette
compare_means	Comparison of Means
create_aes	Create Aes Mapping from a List

-- D --

desc_statby	Descriptive statistics by groups
diff_express	Differential gene expression analysis results
drawDetails.splitText	Draw a Paragraph of Text

-- F --

facet	Facet a ggplot into Multiple Panels
fill_palette	Set Color Palette
font	Change the Appearance of Titles and Axis Labels

-- G --

gene_citation	Gene Citation Index
gene_expression	Gene Expression Data
geom_bracket	Add Brackets with Labels to a GGPlot
geom_exec	Execute ggplot2 functions
geom_pwc	Add Pairwise Comparisons P-values to a GGPlot
get_breaks	Easy Break Creation for Numeric Axes
get_coord	Checks and Returns Data Coordinates from Multiple Input Options
get_legend	Extract Legends from a ggplot object
get_palette	Generate Color Palettes
ggadd	Add Summary Statistics or a Geom onto a ggplot
ggadjust_pvalue	Adjust p-values Displayed on a GGPlot
ggarrange	Arrange Multiple ggplots
ggballoonplot	Ballon plot
ggbarplot	Bar plot
ggboxplot	Box plot
ggdensity	Density plot
ggdonutchart	Donut chart
ggdotchart	Cleveland's Dot Plots
ggdotplot	Dot plot
ggecdf	Empirical cumulative density function
ggerrorplot	Visualizing Error
ggexport	Export ggplots
gghistogram	Histogram plot
ggline	Line plot
ggmaplot	MA-plot from means and log fold changes
ggpaired	Plot Paired Data
ggpar	Graphical parameters
ggparagraph	Draw a Paragraph of Text
ggpie	Pie chart
ggpubr_args	ggpubr General Arguments Description
ggpubr_options	Global Options for GGPubr
ggqqplot	QQ Plots
ggscatter	Scatter plot
ggscatterhist	Scatter Plot with Marginal Histograms
ggstripchart	Stripcharts
ggsummarystats	GGPLOT with Summary Stats Table Under the Plot
ggsummarytable	GGPLOT with Summary Stats Table Under the Plot
ggtext	Text
ggtexttable	Draw a Textual Table
ggviolin	Violin plot
gradient_color	Set Gradient Color
gradient_fill	Set Gradient Color
grids	Add Grids to a ggplot

-- L --

Publication ready theme

-- M --

mean_ci	Add Summary Statistics onto a ggplot.
mean_range	Add Summary Statistics onto a ggplot.
mean_sd	Add Summary Statistics onto a ggplot.
mean_se_	Add Summary Statistics onto a ggplot.
median_hilow_	Add Summary Statistics onto a ggplot.
median_iqr	Add Summary Statistics onto a ggplot.
median_mad	Add Summary Statistics onto a ggplot.
median_q1q3	Add Summary Statistics onto a ggplot.
median_range	Add Summary Statistics onto a ggplot.

-- N --

Convert NPC to Data Coordinates

-- P --

print.ggscatterhist	Scatter Plot with Marginal Histograms
print.ggsummarystats	GGPLOT with Summary Stats Table Under the Plot
print.ggsummarystats_list	GGPLOT with Summary Stats Table Under the Plot

-- R --

rotate	Rotate a ggplot Horizontally
rotate_axis_text	Rotate Axes Text
rotate_x_text	Rotate Axes Text
rotate_y_text	Rotate Axes Text
rownames_style	Draw a Textual Table
rremove	Remove a ggplot Component

-- S --

set_palette	Set Color Palette
show_line_types	Line types available in R
show_point_shapes	Point shapes available in R
stat_anova_test	Add Anova Test P-values to a GGPlot
stat_bracket	Add Brackets with Labels to a GGPlot
stat_central_tendency	Add Central Tendency Measures to a GGPLot
stat_chull	Plot convex hull of a set of points
stat_compare_means	Add Mean Comparison P-values to a ggplot
stat_conf_ellipse	Plot confidence ellipses.
stat_cor	Add Correlation Coefficients with P-values to a Scatter Plot
stat_friedman_test	Add Friedman Test P-values to a GGPlot
stat_kruskal_test	Add Kruskal-Wallis Test P-values to a GGPlot
stat_mean	Draw group mean points
stat_overlay_normal_density	Overlay Normal Density Plot
stat_pvalue_manual	Add Manually P-values to a ggplot
stat_pwc	Add Pairwise Comparisons P-values to a GGPlot
stat_regline_equation	Add Regression Line Equation and R-Square to a GGPLOT.
stat_stars	Add Stars to a Scatter Plot
stat_welch_anova_test	Add Welch One-Way ANOVA Test P-values to a GGPlot

-- T --

table_cell_bg	Draw a Textual Table
table_cell_font	Draw a Textual Table
tab_add_border	Draw a Textual Table
tab_add_footnote	Draw a Textual Table
tab_add_hline	Draw a Textual Table
tab_add_title	Draw a Textual Table
tab_add_vline	Draw a Textual Table
tab_cell_crossout	Draw a Textual Table
tab_ncol	Draw a Textual Table
tab_nrow	Draw a Textual Table
tbody_add_border	Draw a Textual Table
tbody_style	Draw a Textual Table
text_grob	Create a Text Graphical object
thead_add_border	Draw a Textual Table
theme_classic2	Publication ready theme
theme_cleveland	Cleveland's Dot Plots
theme_pubclean	Publication ready theme
theme_pubr	Publication ready theme
theme_transparent	Create a ggplot with Transparent Background
ttheme	Draw a Textual Table

-- X --

Change Axis Scale: log2, log10 and more

-- Y --

Change Axis Scale: log2, log10 and more