aggregate_feature |
Aggregate features using feature loadings |
bernoulli_kernel |
Caculate the Bernoulli kernel |
count_table |
OTU read count table from the ECAM data |
est_test_subject |
Estimate subject loading of testing data |
format_tempted |
Format data table into the input of tempted |
meta_table |
Meta data table from the ECAM data |
plot_feature_summary |
Plot nonparametric smoothed mean and error bands of features versus time |
plot_metafeature |
Plot nonparametric smoothed mesan and error bands of meta features versus time |
plot_time_loading |
Plot the temporal loading functions |
processed_table |
Central-log-ratio (clr) transformed OTU table from the ECAM data |
ratio_feature |
Take log ratio of the abundance of top features over bottom features |
reconstruct |
Reconstruct tensor from low dimensional components |
svd_centralize |
Remove the mean structure of the temporal tensor |
tdenoise |
Calculate the de-noised temporal tensor |
tempted |
Decomposition of temporal tensor |
tempted_all |
Run all major functions of tempted |