convertPos |
Conversion of genetic map positions |
customMap |
Custom recombination map |
estimateCoeffs |
Estimation of one- and two-locus relatedness coefficients |
estimateIdentity |
Estimation of one- and two-locus relatedness coefficients |
estimateInbreeding |
Estimation of one- and two-locus relatedness coefficients |
estimateKappa |
Estimation of one- and two-locus relatedness coefficients |
estimateKinship |
Estimation of one- and two-locus relatedness coefficients |
estimateTwoLocusIdentity |
Estimation of one- and two-locus relatedness coefficients |
estimateTwoLocusInbreeding |
Estimation of one- and two-locus relatedness coefficients |
estimateTwoLocusKappa |
Estimation of one- and two-locus relatedness coefficients |
estimateTwoLocusKinship |
Estimation of one- and two-locus relatedness coefficients |
extractIds |
Extract ID labels from simulation output |
findPattern |
Find specific IBD patterns |
haploDraw |
Draw haplotypes onto a pedigree plot |
ibdsim |
IBD simulation |
karyoDiploid |
Diploid karyogram |
karyogram2 |
Karyogram plots |
karyoHaploid |
Haploid karyogram |
loadMap |
Load a built-in genetic map |
mapLen |
Physical and genetic map lengths |
mapLen.chromMap |
Physical and genetic map lengths |
mapLen.genomeMap |
Physical and genetic map lengths |
maplengths |
Physical and genetic map lengths |
physRange |
Physical and genetic map lengths |
physRange.chromMap |
Physical and genetic map lengths |
physRange.genomeMap |
Physical and genetic map lengths |
plotSegmentDistribution |
Scatter plots of IBD segment distributions |
profileSimIBD |
Simulate markers conditional on a given IBD pattern |
realised |
Realised relatedness |
realisedIdentity |
Realised relatedness |
realisedInbreeding |
Realised relatedness |
realisedKappa |
Realised relatedness |
realisedKinship |
Realised relatedness |
segmentStats |
Summary statistics for identified segments |
uniformMap |
Uniform recombination maps |
zeroIBD |
Probability of zero IBD |