Tidy Presentation of Clinical Reporting

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Documentation for package ‘reportRmd’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

addspace	Add spaces to strings in LaTeX
boxcoxfitRx	fit box cox transformed linear model
cap	Capitalize a string
clear_labels	Clear variable labels from a data frame
covsum	Get covariate summary dataframe
crrRx	fit crr model
ctDNA	Tumour size change over time Longitudinal changes in tumour size since baseline for patients by changes in ctDNA status (clearance, decrease or increase) since baseline.
excelCol	Retrieve columns number from spreadsheet columns specified as unquoted letters
excelColLetters	Retrieve spreadsheet column letter-names from columns indices
extract_labels	Extract variable labels from labelled data frame
forestplot2	Create a forest plot using ggplot2
forestplotMV	Create a multivariable forest plot using ggplot2
forestplotUV	Create an univariable forest plot using ggplot2
forestplotUVMV	Combine an univariable and multivariable forest plot using ggplot2
formatp	Specific p-value formatting
geoR_boxcoxfit	Parameter Estimation for the Box-Cox Transformation
ggkmcif	Plot KM and CIF curves with ggplot
ggkmcif2	Plot KM and CIF curves with ggplot
ggkmcif2Parameters	Additional parameters passed to ggkmcif2
ggkmcif_paste	Plot KM and CIF curves with ggplot
hbld	Bold strings in HTML
lbld	Bold strings in LaTeX
lpvalue	Formats p-values for LaTeX
mvsum	Get multivariate summary dataframe
nestTable	Combine two table columns into a single column with levels of one nested within levels of the other.
nicename	Lean strings for printing
niceNum	Round retaining digits
outTable	Print tables to PDF/Latex HTML or Word
pembrolizumab	Survival data Survival status and ctDNA levels for patients receiving pembrolizumab
plotuv	Plot multiple bivariate relationships in a single plot
psthr	Round and paste with parentheses
pstprn	Paste with parentheses
pvalue	Formats p-values
rmds	Replace dollar signs with html for proper HTML output
rm_cifsum	Summarize cumulative incidence by group
rm_covsum	Outputs a descriptive covariate table
rm_mvsum	Format a regression model nicely for 'Rmarkdown'
rm_survdiff	Display event counts, expected event counts and logrank test of differences
rm_survsum	Summarise survival data by group
rm_survtime	Display survival rates and events for specified times
rm_uvsum	Output several univariate models nicely in a single table
rm_uv_mv	Combine univariate and multivariable regression tables
sanitizestr	Sanitizes strings to not break LaTeX
set_labels	Set variable labels
set_var_labels	Set variable labels
testData	Funky ctDNA data There is a weird factor with all one level, the cohort variable contains a cohort level (and Cohort A) and for one cohort all the size changes are missing
uvsum	Get univariate summary dataframe