Utilities for SNP-Based Kinship Analysis


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Documentation for package ‘skater’ version 0.1.2

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arrange_ids Order IDs across two columns
calc_accuracy Calculate Accuracy
calc_stats Calculate various statistics from a confusion matrix
confusion_matrix Calculate various statistics from a confusion matrix
dibble Degree tibble
fam2ped Fam to pedigree
ibd2kin Compute kinship coefficient from IBD segments
interpolate Interpolate over segments
kin2cm Kinship coefficient to cM
kin2degree Kinship coefficient to degree
ped2kinpair Pedigree to pairwise kinship
plot_pedigree Plot pedigree
read_akt Read AKT kin output file
read_fam Read PLINK-formatted .fam file
read_ibd Read IBD segment file
read_ibis Read IBIS coef output file
read_map Read genetic map file
read_plink2_king Read PLINK KING table