EDGE Taxonomy Assignments Visualization

Documentation for package ‘MetaComp’ version 1.1.2

load_edge_assignment	Efficiently loads an EDGE-produced taxonomic assignment from a file. An assumption has been made - since EDGE tables are generated in an automated fashion, they should be properly formatted - thus the code doesn't check for any inconsistencies except for the very file existence. Note however, the unassigned to taxa entries are removed. This implementation fully relies on the fread function from data.table package gaining performance over traditional R techniques.
load_edge_assignments	Efficiently loads a BWA (or other EDGE-like taxonomic assignment) tables from a list of files. Outputs a named list of assignments.
merge_edge_assignments	Merges two or more EDGE-like taxonomical assignments. The input data frames are assumed to have the following columns: LEVEL, TAXA, and ABUNDANCE - these will be used in the merge procedure, all other columns will be ignored.
merge_edge_counts	Merges two or more EDGE-like taxonomical assignments. The input data frames are assumed to have the following columns: LEVEL, TAXA, and COUNT - these will be used in the merge procedure, all other columns will be ignored.
plot_edge_assignment	Generates a single column ggplot for a taxonomic assignment table and also outputs a PDF.
plot_merged_assignment	Generates a single column ggplot for a taxonomic assignment table.