itsdm-package |
Isolation forest-based presence-only species distribution modeling |
cmcc_bioclim |
Download historic Bioclimatic indicators (BIOs) named CMCC-BioClimInd. |
convert_to_pa |
Convert predicted suitability to presence-absence map. |
detect_envi_change |
Detect areas influenced by a changing environment variable. |
dim_reduce |
Remove environmental variables that have high correlation with others. |
evaluate_po |
Evaluate the model based on presence-only data. |
format_observation |
Format the occurrence dataset for usage in 'itsdm' |
future_cmcc_bioclim |
Download future Bioclimatic indicators (BIOs) named CMCC-BioClimInd. |
future_worldclim2 |
A function to parse the future climate from worldclim version 2.1. |
independent_response |
Calculate independent responses of each variables. |
isotree_po |
Build Isolation forest species distribution model and explain the the model and outputs. |
itsdm |
Isolation forest-based presence-only species distribution modeling |
mainland_africa |
Boundary of mainland Africa |
marginal_response |
Calculate marginal responses of each variables. |
occ_virtual_species |
Occurrence dataset of a virtual species |
plot.EnviChange |
Display the figure and map of the 'EnviChange' object. |
plot.EnvironmentalOutlier |
Exhibit suspicious outliers in an observation dataset. |
plot.IndependentResponse |
Show independent response curves. |
plot.MarginalResponse |
Show marginal response curves. |
plot.PAConversion |
Display results of conversion to presence-absence (PA). |
plot.POEvaluation |
Show model evaluation. |
plot.ShapDependence |
Show variable dependence plots and variable interaction plots obtained from Shapley values. |
plot.SHAPSpatial |
Display Shapley values-based spatial variable dependence maps. |
plot.SpatialResponse |
Display spatial variable dependence maps. |
plot.VariableAnalysis |
Display variable importance. |
plot.VariableContribution |
Exhibit variable contribution for target observations. |
print.EnviChange |
Print summary information from 'EnviChange' object. |
print.EnvironmentalOutlier |
Print summary information from 'EnvironmentalOutlier' object. |
print.FormatOccurrence |
Print summary information from 'FormatOccurrence' object. |
print.PAConversion |
Print summary information from 'PAConversion' object. |
print.POEvaluation |
Print summary information from model evaluation object ('POEvaluation'). |
print.POIsotree |
Print summary information from 'POIsotree' object. |
print.ReducedImageStack |
Print summary information from 'ReducedImageStack' object. |
print.VariableAnalysis |
Print summary information from variable importance object ('VariableAnalysis'). |
probability |
Estimate suitability on 'stars' object using trained 'isolation.forest' model. |
shap_dependence |
Calculate Shapley value-based variable dependence. |
shap_spatial_response |
Calculate shapley values-based spatial response. |
spatial_response |
Calculate spatial response or dependence figures. |
suspicious_env_outliers |
Function to detect suspicious outliers based on environmental variables. |
variable_analysis |
Function to evaluate relative importance of each variable. |
variable_contrib |
Evaluate variable contributions for targeted observations. |
worldclim2 |
Download environmental variables made by worldclim version 2.1. |