L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model

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Documentation for package ‘penalized’ version 0.9-52

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

as.data.frame-method	Breslow estimator object
as.data.frame-method	Penalized regression object
as.list-method	Breslow estimator object
as.matrix-method	Breslow estimator object
basehaz-method	Penalized regression object
basesurv	Penalized regression object
basesurv-method	Penalized regression object
breslow	Breslow estimator object
breslow-class	Breslow estimator object
coef-method	Penalized regression object
coefficients-method	Penalized regression object
contr.diff	Contrast functions for penalized regression
contr.none	Contrast functions for penalized regression
cvl	Cross-validated penalized regression
fitted-method	Penalized regression object
fitted.values-method	Penalized regression object
linear.predictors	Penalized regression object
linear.predictors-method	Penalized regression object
loglik	Penalized regression object
loglik-method	Penalized regression object
nki70	The 70 gene signature of the Netherlands Cancer Institute for prediction of metastasis-free survival, measured on 144 independent lymph node positive patients.
optL1	Cross-validated penalized regression
optL2	Cross-validated penalized regression
penalized	Penalized regression
penalty	Penalized regression object
penalty-method	Penalized regression object
penfit	Penalized regression object
penfit-class	Penalized regression object
plot-method	Breslow estimator object
plotpath	Plotting the LASSO path
predict	Prediction based on penfit objects
predict-method	Prediction based on penfit objects
profL1	Cross-validated penalized regression
profL2	Cross-validated penalized regression
residuals-method	Penalized regression object
show-method	Breslow estimator object
show-method	Penalized regression object
survival	Breslow estimator object
survival-method	Breslow estimator object
time-method	Breslow estimator object
weights-method	Penalized regression object
[-method	Breslow estimator object
[[-method	Breslow estimator object