Enhance Reproducibility of R Code
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Documentation for package ‘reproducible’ version 2.0.12
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A B C D E F G I K L M N O P R S T U V W misc
| reproducible-package | The 'reproducible' package |
-- A --
| asPath | Coerce a character string to a class "Path" |
| asPath.character | Coerce a character string to a class "Path" |
| asPath.null | Coerce a character string to a class "Path" |
| assessDataType | Assess the appropriate raster layer data type |
| assessDataType.default | Assess the appropriate raster layer data type |
-- B --
| basename2 | A version of 'base::basename' that is 'NULL' resistant |
-- C --
| Cache | Saves a wide variety function call outputs to disk and optionally RAM, for recovery later |
| CacheDBFile | Functions to create and work with a cache |
| CacheDBTableName | Functions to create and work with a cache |
| CacheDigest | The exact digest function that 'Cache' uses |
| CacheGeo | Cache-like function for spatial domains |
| CacheIsACache | Functions to create and work with a cache |
| CacheStorageDir | Functions to create and work with a cache |
| CacheStoredFile | Functions to create and work with a cache |
| cc | Examining and modifying the cache |
| checkAndMakeCloudFolderID | Check for presence of 'checkFolderID' (for 'Cache(useCloud)') |
| checkPath | Check directory path |
| checkPath-method | Check directory path |
| checkRelative | An alternative to 'basename' and 'dirname' when there are sub-folders |
| Checksums | Calculate checksum |
| Checksums-method | Calculate checksum |
| clearCache | Examining and modifying the cache |
| clearCache-method | Examining and modifying the cache |
| cloudDownload | Download from cloud, if necessary |
| compareNA | 'NA'-aware comparison of two vectors |
| convertPaths | Change the absolute path of a file |
| convertRasterPaths | Change the absolute path of a file |
| Copy | Recursive copying of nested environments, and other "hard to copy" objects |
| Copy-method | Recursive copying of nested environments, and other "hard to copy" objects |
| copyFile | Copy a file using 'robocopy' on Windows and 'rsync' on Linux/macOS |
| copySingleFile | Copy a file using 'robocopy' on Windows and 'rsync' on Linux/macOS |
| createCache | Functions to create and work with a cache |
| cropTo | Transform a GIS dataset so it has the properties (extent, projection, mask) of another |
-- D --
| dataType2 | Get min or maximum value of a (Spat)Raster |
| determineFilename | Determine filename, either automatically or manually |
| downloadFile | A wrapper around a set of downloading functions |
| downloadRemote | Download a remote file |
-- E --
| extractFromArchive | Extract files from archive |
-- F --
| fastMask | Faster operations on rasters (DEPRECATED because 'terra::mask' is fast) |
| Filenames | Return the filename(s) from a Raster* object |
| Filenames-method | Return the filename(s) from a Raster* object |
| fixErrorsIn | Fix common errors in GIS layers, using 'terra' |
-- G --
| getRelative | Relative paths |
-- I --
| internetExists | Checks for existed of a url or the internet using <https://CRAN.R-project.org> |
| isUpdated | Has a cached object has been updated? |
-- K --
| keepCache | Examining and modifying the cache |
| keepCache-method | Examining and modifying the cache |
-- L --
| linkOrCopy | Hardlink, symlink, or copy a file |
| loadFromCache | Functions to create and work with a cache |
-- M --
| makeRelative | Relative paths |
| maskTo | Transform a GIS dataset so it has the properties (extent, projection, mask) of another |
| maxFn | Get min or maximum value of a (Spat)Raster |
| mergeCache | Merge two cache repositories together |
| mergeCache-method | Merge two cache repositories together |
| messageColoured | Use 'message' with a consistent use of 'verbose' |
| messageDF | Use 'message' with a consistent use of 'verbose' |
| messageQuestion | Use 'message' with a consistent use of 'verbose' |
| minFn | Get min or maximum value of a (Spat)Raster |
| movedCache | Deal with moved cache issues |
-- N --
| nlayers2 | Get min or maximum value of a (Spat)Raster |
| normPath | Normalize file paths |
| normPath-method | Normalize file paths |
| normPathRel | Normalize file paths |
-- O --
| objSize | Wrapper around 'lobstr::obj_size' |
| objSizeSession | Wrapper around 'lobstr::obj_size' |
-- P --
| paddedFloatToChar | Convert numeric to character with padding |
| Path-class | Coerce a character string to a class "Path" |
| postProcess | Generic function to post process objects |
| postProcess.default | Generic function to post process objects |
| postProcess.list | Generic function to post process objects |
| postProcessTerra | Transform a GIS dataset so it has the properties (extent, projection, mask) of another |
| postProcessTo | Transform a GIS dataset so it has the properties (extent, projection, mask) of another |
| prepInputs | Download and optionally post-process files |
| preProcess | Download, Checksum, Extract files |
| preProcessParams | Download, Checksum, Extract files |
| projectTo | Transform a GIS dataset so it has the properties (extent, projection, mask) of another |
-- R --
| rasterRead | A helper to 'getOption("reproducible.rasterRead")' |
| reproducible | The 'reproducible' package |
| reproducibleOptions | 'reproducible' options |
| retry | A wrapper around 'try' that retries on failure |
| rmFromCache | Functions to create and work with a cache |
-- S --
| saveToCache | Save an object to Cache |
| searchFull | Search up the full scope for functions |
| searchFullEx | Search up the full scope for functions |
| set.randomseed | Set seed with a random value using Sys.time() |
| showCache | Examining and modifying the cache |
| showCache-method | Examining and modifying the cache |
| studyAreaName | Get a unique name for a given study area |
| studyAreaName-method | Get a unique name for a given study area |
| suffix | Add a prefix or suffix to the basename part of a file path |
-- T --
| tempdir2 | Make a temporary (sub-)directory |
| tempfile2 | Make a temporary file in a temporary (sub-)directory |
-- U --
| unrarPath | The known path for unrar or 7z |
| urlExists | Checks for existed of a url or the internet using <https://CRAN.R-project.org> |
-- V --
| values2 | Get min or maximum value of a (Spat)Raster |
-- W --
| writeFuture | Write to cache repository, using 'future::future' |
| writeTo | Transform a GIS dataset so it has the properties (extent, projection, mask) of another |
-- misc --
| .debugCache | Attach debug info to return for Cache |
| .file.move | Move a file to a new location - Defunct - use 'hardLinkOrCopy' |
| .prefix | Add a prefix or suffix to the basename part of a file path |
| .prepareFileBackedRaster | Copy the file-backing of a file-backed Raster* object |
| .removeCacheAtts | Remove attributes that are highly varying |
| .requireNamespace | Provide standard messaging for missing package dependencies |
| .setSubAttrInList | Set subattributes within a list by reference |
| .suffix | Add a prefix or suffix to the basename part of a file path |
| .unrarPath | The known path for unrar or 7z |
| .unwrap | Deal with class for saving to and loading from Cache or Disk |
| .unwrap.default | Deal with class for saving to and loading from Cache or Disk |
| .unwrap.environment | Deal with class for saving to and loading from Cache or Disk |
| .unwrap.list | Deal with class for saving to and loading from Cache or Disk |
| .wrap | Deal with class for saving to and loading from Cache or Disk |
| .wrap.default | Deal with class for saving to and loading from Cache or Disk |
| .wrap.environment | Deal with class for saving to and loading from Cache or Disk |
| .wrap.list | Deal with class for saving to and loading from Cache or Disk |