build_model |
Build Users' Own Model |
compute_EIIP |
Extract the EIIP-derived features |
compute_EucDistance |
Compute Euclidean Distance |
compute_FickettScore |
Compute Fickett TESTCODE Score |
compute_GC |
Calculate GC content |
compute_hexamerScore |
Compute Hexamer Score |
compute_kmer |
Compute _k_-mer Features |
compute_LogDistance |
Compute Logarithm Distance |
compute_pI |
Compute Theoretical Isoelectric Point |
demo_dataset |
A demo of dataset |
demo_DNA.seq |
A demo of DNA sequences |
demo_SS.seq |
A demo of secondary structure sequences |
extract_features |
Extract the Features |
find_orfs |
Find ORFs |
lnc_finder |
Long Non-coding RNA Identification |
make_frequencies |
Make the frequencies file for new classifier construction |
make_referFreq |
Make Frequencies File for Log.Dist, Euc.Dist, and hexamer score |
read_SS |
Read Secondary Structure Information |
run_RNAfold |
Obtain the Secondary Structure Sequences Using RNAfold |
svm_cv |
_k_-fold Cross Validation for SVM |
svm_tune |
Parameter Tuning of SVM |