Classes and Methods for "Class Discovery" with Microarrays or Proteomics

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Documentation for package ‘ClassDiscovery’ version 3.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

aspectHeatmap	Heatmap with control over the aspect ratio
BootstrapClusterTest	Class "BootstrapClusterTest"
BootstrapClusterTest-class	Class "BootstrapClusterTest"
cluster3	Cluster a Dataset Three Ways
ClusterTest	Class "ClusterTest"
ClusterTest-class	Class "ClusterTest"
cutHclust	Get the List of Classes From A Clustering Algorithm
cutKmeans	Get the List of Classes From A Clustering Algorithm
cutPam	Get the List of Classes From A Clustering Algorithm
cutRepeatedKmeans	Get the List of Classes From A Clustering Algorithm
distanceMatrix	Distance Matrix Computation
GenePCA	Class "GenePCA"
GenePCA-class	Class "GenePCA"
hclust-class	Class "hclust"
hist-method	Class "ClusterTest"
identify-method	Class "SamplePCA"
image-method	Class "ClusterTest"
mahalanobisQC	Using Mahalanobis Distance and PCA for Quality Control
Mosaic	Class "Mosaic"
Mosaic-class	Class "Mosaic"
PCanova	Class "PCanova"
PCanova-class	Class "PCanova"
pcc	Plot Dendrograms with Color-Coded Labels
PerturbationClusterTest	The PerturbationClusterTest Class
PerturbationClusterTest-class	The PerturbationClusterTest Class
plot-method	Class "SamplePCA"
plot-method	Class "GenePCA"
plot-method	Class "Mosaic"
plot-method	Class "PCanova"
plotColoredClusters	Plot Dendrograms with Color-Coded Labels
pltree-method	Class "Mosaic"
pltree-method	Class "PCanova"
predict-method	Class "SamplePCA"
repeatedKmeans	Get the List of Classes From A Clustering Algorithm
SamplePCA	Class "SamplePCA"
SamplePCA-class	Class "SamplePCA"
screeplot-method	Class "SamplePCA"
summary-method	Class "ClusterTest"
summary-method	Class "BootstrapClusterTest"
summary-method	The PerturbationClusterTest Class
summary-method	Class "SamplePCA"
summary-method	Class "Mosaic"
summary-method	Class "PCanova"
text-method	Class "SamplePCA"