Classes and Methods for "Class Discovery" with Microarrays or Proteomics


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Documentation for package ‘ClassDiscovery’ version 3.3.13

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aspectHeatmap Heatmap with control over the aspect ratio
BootstrapClusterTest Class "BootstrapClusterTest"
BootstrapClusterTest-class Class "BootstrapClusterTest"
cluster3 Cluster a Dataset Three Ways
ClusterTest Class "ClusterTest"
ClusterTest-class Class "ClusterTest"
cutHclust Get the List of Classes From A Clustering Algorithm
cutKmeans Get the List of Classes From A Clustering Algorithm
cutPam Get the List of Classes From A Clustering Algorithm
cutRepeatedKmeans Get the List of Classes From A Clustering Algorithm
distanceMatrix Distance Matrix Computation
GenePCA Class "GenePCA"
GenePCA-class Class "GenePCA"
hclust-class Class "hclust"
hist-method Class "ClusterTest"
identify-method Class "SamplePCA"
image-method Class "ClusterTest"
mahalanobisQC Using Mahalanobis Distance and PCA for Quality Control
Mosaic Class "Mosaic"
Mosaic-class Class "Mosaic"
PCanova Class "PCanova"
PCanova-class Class "PCanova"
pcc Plot Dendrograms with Color-Coded Labels
PerturbationClusterTest The PerturbationClusterTest Class
PerturbationClusterTest-class The PerturbationClusterTest Class
plot-method Class "SamplePCA"
plot-method Class "GenePCA"
plot-method Class "Mosaic"
plot-method Class "PCanova"
plotColoredClusters Plot Dendrograms with Color-Coded Labels
pltree-method Class "Mosaic"
pltree-method Class "PCanova"
predict-method Class "SamplePCA"
repeatedKmeans Get the List of Classes From A Clustering Algorithm
SamplePCA Class "SamplePCA"
SamplePCA-class Class "SamplePCA"
screeplot-method Class "SamplePCA"
summary-method Class "ClusterTest"
summary-method Class "BootstrapClusterTest"
summary-method The PerturbationClusterTest Class
summary-method Class "SamplePCA"
summary-method Class "Mosaic"
summary-method Class "PCanova"
text-method Class "SamplePCA"