GUI Tools Made Easy: Interact with Models and Explore Data

Documentation for package ‘PBSmodelling’ version 2.69.3

Help Pages

PBS Modelling

-- A --

addArrows	Add Arrows to a Plot Using Relative (0:1) Coordinates
addHistory	Create Structures for a New History Widget
addLabel	Add a Label to a Plot Using Relative (0:1) Coordinates
addLegend	Add a Legend to a Plot Using Relative (0:1) Coordinates

-- B --

backHistory	Create Structures for a New History Widget
break-class	S4: Present Talk Classes

-- C --

calcFib	Calculate Fibonacci Numbers by Several Methods
calcGM	Calculate the Geometric Mean, Allowing for Zeroes
calcMin	Calculate the Minimum of a User-Defined Function
CCA.qbr	Data: Sampled Counts of Quillback Rockfish (Sebastes maliger)
chooseWinVal	Choose and Set a String Item in a GUI
cleanProj	Launch a GUI for Project File Deletion
cleanWD	Launch a GUI for File Deletion
clearAll	Remove all R Objects From a Specified Environment
clearHistory	Create Structures for a New History Widget
clearPBSext	Clear File Extension Associations
clearRcon	Clear the R Console / Focus on the RGui Window
clearWinVal	Remove all Current Widget Variables
clipVector	Clip a Vector at One or Both Ends
closeWin	Close GUI Window(s)
code-class	S4: Present Talk Classes
compileC	Compile a C File into a Shared Library Object
compileDescription	Convert and Save a Window Description as a List
convSlashes	Convert Slashes from UNIX to DOS
createVector	Create a GUI with a Vector Widget
createWin	Create a GUI Window

-- D --

declareGUIoptions	Declare Option Names that Correspond with Widget Names
doAction	Execute Action Created by a Widget
drawBars	Draw a Linear Barplot on the Current Plot

-- E --

evalCall	Evaluate a Function Call
expandGraph	Expand the Plot Area by Adjusting Margins
exportHistory	Export a Saved History

-- F --

file-class	S4: Present Talk Classes
findPat	Search a Character Vector to Find Multiple Patterns
findPrefix	Find a Prefix Based on Names of Existing Files
findProgram	Locates a program in the PATH environment variable
findSuffix	Find a Prefix Based on Names of Existing Files
firstHistory	Create Structures for a New History Widget
focusRgui	Clear the R Console / Focus on the RGui Window
focusWin	Set the Focus on a Particular Window
forwHistory	Create Structures for a New History Widget

-- G --

genMatrix	Generate Test Matrices for plotBubbles
getChoice	Choose One String Item from a List of Choices
getGUIoptions	Get PBS Options for Widgets
getOptions	Get and Set User Options
getOptionsFileName	Get and Set File Name for Saving and Loading of Options
getOptionsPrefix	Get and Set GUI Prefix of Options Class
getPBSext	Get Command Associated With File Name Extension
getPBSoptions	Retrieve A User Option
getWinAct	Retrieve the Last Window Action
getWinFun	Retrieve Names of Functions Referenced in a Window
getWinVal	Retrieve Widget Values for Use in R Code
getYes	Prompt the User to Choose Yes or No
GT0	Restrict a Numeric Variable to a Positive Value

-- I --

importHistory	Import a History List from a File
initHistory	Create Structures for a New History Widget
isWhat	Identify an Object and Print Information

-- J --

Create Structures for a New History Widget

-- L --

lastHistory	Create Structures for a New History Widget
lisp	List Objects in .PBSmodEnv Workspace
loadC	Launch a GUI for Compiling and Loading C Code
loadOptions	Save and Load Options to and from Disk
loadOptionsGUI	Load and Save Options Values to and from a GUI
lucent	Convert Solid Colours to Translucence

-- O --

openExamples	Open Example Files from a Package
openFile	Open File with Associated Program
openUG	Open Package User Guide

-- P --

packList	Pack a List with Objects
pad0	Pad Values with Leading Zeroes
parseWinFile	Convert a Window Description File into a List Object
pause	Pause Between Graphics Displays or Other Calculations
PBSmodelling	PBS Modelling
PBSoptions-class	S4: Project Options Class
pickCol	Pick a Colour From a Palette and get the Hexadecimal Code
plotACF	Plot Autocorrelation Bars From a Data Frame, Matrix, or Vector
plotAsp	Construct a Plot with a Specified Aspect Ratio
plotBubbles	Construct a Bubble Plot from a Matrix
plotCsum	Plot Cumulative Sum of Data
plotDens	Plot Density Curves from a Data Frame, Matrix, or Vector
plotFriedEggs	Render a Pairs Plot as Fried Eggs and Beer
plotSidebars	Plot Table as Horizontal Sidebars
plotTrace	Plot Trace Lines from a Data Frame, Matrix, or Vector
presentTalk	Run a Presentation in R
print-method	S4: Project Options Class
promptWriteOptions	Prompt the User to Write Changed Options

-- R --

readList	Read a List from an ASCII File
readPBSoptions	Read PBS Options from an External File
resetGraph	Reset par Values for a Plot
restorePar	Get Actual Parameters from Scaled Values
rmHistory	Create Structures for a New History Widget
runDemos	Interactive GUI for R Demos
runExample	Run a Single GUI Example Included with PBS Modelling
runExamples	Run GUI Examples Included with PBS Modelling

-- S --

saveOptions	Save and Load Options to and from Disk
saveOptionsAs	Save and Load Options to and from Disk
saveOptionsGUI	Load and Save Options Values to and from a GUI
scalePar	Scale Parameters to [0,1]
section-class	S4: Present Talk Classes
selectDir	Display Dialogue: Select directory
selectFile	Display Dialogue: Open or Save File
setFileOption	Set a PBS File Path Option Interactively
setGUIoptions	Set PBS Options from Widget Values
setOptions	Get and Set User Options
setOptionsFileName	Get and Set File Name for Saving and Loading of Options
setOptionsPrefix	Get and Set GUI Prefix of Options Class
setPathOption	Set a PBS Path Option Interactively
setPBSext	Set Command to Associate with File Name Extension
setPBSoptions	Set A User Option
setwdGUI	Browse for Working Directory and Optionally Find Prefix
setWidgetColor	Update Widget Color
setWidgetState	Update Widget State
setWinAct	Add a Window Action to the Saved Action Vector
setWinVal	Update Widget Values
show-method	S4: Project Options Class
show0	Convert Numbers into Text with Specified Decimal Places
showAlert	Display a Message in an Alert Window
showArgs	Display Expected Widget Arguments
showHelp	Display HTML Help Pages for Packages in Browser
showPacks	Show Packages Required But Not Installed
showRes	Show Results of Expression Represented by Text
showVignettes	Display Vignettes for Packages
sortHistory	Sort an Active or Saved History

-- T --

talk-class	S4: Present Talk Classes
tcall	Get/Put Objects From/To Temporary Work Environment
testAlpha	Test Various Alpha Transparency Values
testCol	Display Colours Available Using a Set of Strings
testLty	Display Line Types Available
testLwd	Display Line Widths
testWidgets	Display Sample GUIs and their Source Code
text-class	S4: Present Talk Classes
tget	Get/Put Objects From/To Temporary Work Environment
tprint	Get/Put Objects From/To Temporary Work Environment
tput	Get/Put Objects From/To Temporary Work Environment

-- U --

unpackList	Unpack List Elements into Variables
updateGUI	Update Active GUI With Local Values

-- V --

vbdata	Data: Lengths-at-Age for von Bertalanffy Curve
vbpars	Data: Initial Parameters for a von Bertalanffy Curve
view	View First/Last/Random n Elements/Rows of an Object
viewCode	View Package R Code

-- W --

widgets	Display Sample GUIs and their Source Code
writeList	Write a List to a File in PBS Modelling Format
writePBSoptions	Write PBS Options to an External File

-- misc --