addLegend |
addLegend |
addPhylo |
addPhylo |
addTraits |
addTraits |
betadiv_disparity |
Map change in morphological disparity |
betadiv_phylogenetic |
Map phylogenetic turnover in species communities |
betadiv_taxonomic |
Map turnover in species communities |
calcMeanShape |
Calculate mean shape per grid cell |
coordsFromEpmGrid |
Retrieve coordinates from epmGrid |
createEPMgrid |
Create epmGrid object |
customBetaDiv |
Custom beta diversity metrics |
customGridMetric |
Custom grid metrics |
dropSpecies |
Drop species from epmGrid |
DRstat |
Calculate the DR statistic |
epm |
EcoPhyloMapper (epm) |
epm-example |
Eco Phylo Mapper datasets |
epmToPhyloComm |
Convert epmGrid to community matrix |
expandSpeciesCellList |
Expand species list |
extractFromEpmGrid |
Extract from epmGrid |
faithPD |
Calculate Faith's Phylogenetic Diversity |
generateOccurrenceMatrix |
Convert epmGrid to community matrix |
getExtentOfList |
Get extent of list |
getMultiMapRamp |
Extract min and max for multiple epmGrids |
getSpPartialDisparities |
Partial Disparity |
gridMetrics |
Grid Metrics |
identify.epmGrid |
Interactively identify species in epmGrid |
interactiveExtent |
Interactively choose extent |
plot.epmGrid |
Plot epmGrid |
plotDispersionField |
Plot dispersion fields |
plotSpRange |
plot a single species' range |
rasterToGrid |
Convert raster to sf grid |
read.epmGrid |
Read a epmGrid object |
reduceToCommonTaxa |
Subset epmGrid to shared taxa |
singleSpCellIndex |
Identify single-species cells |
spCountIndex |
Identify cells that have a certain number of taxa |
summarizeEpmGridList |
Summarize lists of epmGrid objects |
summary.epmGrid |
epmGrid summary |
tableFromEpmGrid |
Data table from epmGrid |
tamiasEPM |
Eco Phylo Mapper datasets |
tamiasPolyList |
Eco Phylo Mapper datasets |
tamiasTraits |
Eco Phylo Mapper datasets |
tamiasTree |
Eco Phylo Mapper datasets |
tamiasTreeSet |
Eco Phylo Mapper datasets |
write.epmGrid |
Save epmGrid object |
writeEpmSpatial |
Write epmGrid Spatial Object to Disk |