Isoscape Computation and Inference of Spatial Origins using Mixed Models


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Documentation for package ‘IsoriX’ version 0.9.2

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IsoriX-package Isoscape Computation and Inference of Spatial Origins using Mixed Models
AssignDataAlien Simulated assignment dataset
AssignDataBat Assignment dataset for bat species
AssignDataBat2 Assignment dataset for bat species
CalibDataAlien Simulated calibration dataset
CalibDataBat Calibration dataset for bat species
CalibDataBat2 Calibration dataset for bat species
Calibfit Defunct and deprecated functions
calibfit Fit the calibration model (or load parameters from calibration done outside IsoriX)
CALIBFIT-class Class CALIBFIT
CountryBorders Borders of world CountryBorders
create_aliens Simulate datasets for calibrations or assignments
downloadfile Download files and check their binary integrity
ElevRasterDE The raster of elevation for Germany
GetElev Defunct and deprecated functions
getelev Download an elevation raster from internet
getOption_IsoriX Setting and displaying the options of the package
getprecip Download rasters of monthly precipitation from internet
GNIPDataALLagg Hydrogen delta values in precipitation water (aggregated per location)
GNIPDataDE Hydrogen delta values in precipitation water, Germany
GNIPDataEUagg Hydrogen delta values in precipitation water (aggregated per location)
isofind Infer spatial origins
ISOFIND-class Class ISOFIND
Isofit Defunct and deprecated functions
isofit Fit the isoscape models
isomultifit Fit isoscape models per strata (typically time interval such as months)
isomultiscape Predicts the average spatial distribution of isotopic values over months, years...
isopalette1 Colour palettes for plotting
isopalette2 Colour palettes for plotting
IsoriX Isoscape Computation and Inference of Spatial Origins using Mixed Models
Isorix Defunct and deprecated functions
IsoriX-defunct Defunct and deprecated functions
Isoscape Defunct and deprecated functions
isoscape Predicts the spatial distribution of source isotopic values
ISOSCAPE-class Class ISOSCAPE
Isosim Defunct and deprecated functions
OceanMask Mask of world oceans
options Setting and displaying the options of the package
options_IsoriX Setting and displaying the options of the package
plot.CALIBFIT Plotting functions for IsoriX
plot.ISOFIND Plotting functions for IsoriX
plot.ISOFIT Plotting functions for IsoriX
plot.ISOSCAPE Plotting functions for IsoriX
plot.SpatRaster Plotting functions for IsoriX
plots Plotting functions for IsoriX
points.CALIBFIT Plotting functions for IsoriX
PrecipBrickDE The precipitation monthly amounts for Germany
prepcipitate Prepare the raster brick containing the precipitation data
prepdata Defunct and deprecated functions
prepelev Defunct and deprecated functions
prepiso Defunct and deprecated functions
prepraster Prepare the structural raster
prepsources Filter and aggregate the raw source dataset
print.CALIBFIT Fit the calibration model (or load parameters from calibration done outside IsoriX)
print.ISOFIND Infer spatial origins
print.ISOFIT Fit the isoscape models
print.isoscape Predicts the spatial distribution of source isotopic values
QueryGNIP Defunct and deprecated functions
queryGNIP Defunct and deprecated functions
readRDS Save and read objects produced by IsoriX using RDS files
readRDS-method Save and read objects produced by IsoriX using RDS files
readRDS.character Save and read objects produced by IsoriX using RDS files
RElevate Defunct and deprecated functions
relevate Defunct and deprecated functions
saveRDS Save and read objects produced by IsoriX using RDS files
saveRDS-method Save and read objects produced by IsoriX using RDS files
saveRDS.CALIBFIT Save and read objects produced by IsoriX using RDS files
saveRDS.ISOFIND Save and read objects produced by IsoriX using RDS files
saveRDS.ISOSCAPE Save and read objects produced by IsoriX using RDS files
saveRDS_IsoriX Save and read objects produced by IsoriX using RDS files
serialise Save and read objects produced by IsoriX using RDS files
serialize Save and read objects produced by IsoriX using RDS files
summary.CALIBFIT Fit the calibration model (or load parameters from calibration done outside IsoriX)
summary.ISOFIND Infer spatial origins
summary.ISOFIT Fit the isoscape models
summary.isoscape Predicts the spatial distribution of source isotopic values