Isoscape Computation and Inference of Spatial Origins using
Mixed Models
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Documentation for package ‘IsoriX’ version 0.9.2
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| IsoriX-package | Isoscape Computation and Inference of Spatial Origins using Mixed Models |
| AssignDataAlien | Simulated assignment dataset |
| AssignDataBat | Assignment dataset for bat species |
| AssignDataBat2 | Assignment dataset for bat species |
| CalibDataAlien | Simulated calibration dataset |
| CalibDataBat | Calibration dataset for bat species |
| CalibDataBat2 | Calibration dataset for bat species |
| Calibfit | Defunct and deprecated functions |
| calibfit | Fit the calibration model (or load parameters from calibration done outside IsoriX) |
| CALIBFIT-class | Class CALIBFIT |
| CountryBorders | Borders of world CountryBorders |
| create_aliens | Simulate datasets for calibrations or assignments |
| downloadfile | Download files and check their binary integrity |
| ElevRasterDE | The raster of elevation for Germany |
| GetElev | Defunct and deprecated functions |
| getelev | Download an elevation raster from internet |
| getOption_IsoriX | Setting and displaying the options of the package |
| getprecip | Download rasters of monthly precipitation from internet |
| GNIPDataALLagg | Hydrogen delta values in precipitation water (aggregated per location) |
| GNIPDataDE | Hydrogen delta values in precipitation water, Germany |
| GNIPDataEUagg | Hydrogen delta values in precipitation water (aggregated per location) |
| isofind | Infer spatial origins |
| ISOFIND-class | Class ISOFIND |
| Isofit | Defunct and deprecated functions |
| isofit | Fit the isoscape models |
| isomultifit | Fit isoscape models per strata (typically time interval such as months) |
| isomultiscape | Predicts the average spatial distribution of isotopic values over months, years... |
| isopalette1 | Colour palettes for plotting |
| isopalette2 | Colour palettes for plotting |
| IsoriX | Isoscape Computation and Inference of Spatial Origins using Mixed Models |
| Isorix | Defunct and deprecated functions |
| IsoriX-defunct | Defunct and deprecated functions |
| Isoscape | Defunct and deprecated functions |
| isoscape | Predicts the spatial distribution of source isotopic values |
| ISOSCAPE-class | Class ISOSCAPE |
| Isosim | Defunct and deprecated functions |
| OceanMask | Mask of world oceans |
| options | Setting and displaying the options of the package |
| options_IsoriX | Setting and displaying the options of the package |
| plot.CALIBFIT | Plotting functions for IsoriX |
| plot.ISOFIND | Plotting functions for IsoriX |
| plot.ISOFIT | Plotting functions for IsoriX |
| plot.ISOSCAPE | Plotting functions for IsoriX |
| plot.SpatRaster | Plotting functions for IsoriX |
| plots | Plotting functions for IsoriX |
| points.CALIBFIT | Plotting functions for IsoriX |
| PrecipBrickDE | The precipitation monthly amounts for Germany |
| prepcipitate | Prepare the raster brick containing the precipitation data |
| prepdata | Defunct and deprecated functions |
| prepelev | Defunct and deprecated functions |
| prepiso | Defunct and deprecated functions |
| prepraster | Prepare the structural raster |
| prepsources | Filter and aggregate the raw source dataset |
| print.CALIBFIT | Fit the calibration model (or load parameters from calibration done outside IsoriX) |
| print.ISOFIND | Infer spatial origins |
| print.ISOFIT | Fit the isoscape models |
| print.isoscape | Predicts the spatial distribution of source isotopic values |
| QueryGNIP | Defunct and deprecated functions |
| queryGNIP | Defunct and deprecated functions |
| readRDS | Save and read objects produced by IsoriX using RDS files |
| readRDS-method | Save and read objects produced by IsoriX using RDS files |
| readRDS.character | Save and read objects produced by IsoriX using RDS files |
| RElevate | Defunct and deprecated functions |
| relevate | Defunct and deprecated functions |
| saveRDS | Save and read objects produced by IsoriX using RDS files |
| saveRDS-method | Save and read objects produced by IsoriX using RDS files |
| saveRDS.CALIBFIT | Save and read objects produced by IsoriX using RDS files |
| saveRDS.ISOFIND | Save and read objects produced by IsoriX using RDS files |
| saveRDS.ISOSCAPE | Save and read objects produced by IsoriX using RDS files |
| saveRDS_IsoriX | Save and read objects produced by IsoriX using RDS files |
| serialise | Save and read objects produced by IsoriX using RDS files |
| serialize | Save and read objects produced by IsoriX using RDS files |
| summary.CALIBFIT | Fit the calibration model (or load parameters from calibration done outside IsoriX) |
| summary.ISOFIND | Infer spatial origins |
| summary.ISOFIT | Fit the isoscape models |
| summary.isoscape | Predicts the spatial distribution of source isotopic values |