check_simresults |
A function that checks if a call to simulation function worked |
dsairmmenu |
The main menu for the DSAIRM package |
generate_documentation |
A helper function which processes and displays the documentation part for each app |
generate_fctcall |
A helper function that produces a call to a simulator function for specific settings |
generate_ggplot |
A helper function that takes simulation results and produces ggplot plots |
generate_modelsettings |
A function to parse modelsettings for simulation runs |
generate_plotly |
A helper function that takes simulation results and produces plotly plots |
generate_shinyinput |
A helper function that takes a model and generates shiny UI elements |
generate_text |
A helper function that takes result from the simulators and produces text output |
hayden96flu |
Influenza virus load data |
run_model |
A function that runs an app for specific settings and processes results for plot and text generation |
schirm20strep |
Streptococcus pneumoniae infection data |
simulate_acutevirusir_ode |
Acute Virus Infection and IR Model |
simulate_bacteria_fit |
Fitting a simple bacteria infection models to Streptococcus pneumoniae infection data |
simulate_basicbacteria_discrete |
Basic Bacteria model - discrete |
simulate_basicbacteria_modelexploration |
Simulation to illustrate parameter scan of the basic bacteria model #' |
simulate_basicbacteria_ode |
Basic Bacteria model - ODE |
simulate_basicvirus_fit |
Fitting a simple viral infection models to influenza data |
simulate_basicvirus_modelexploration |
Simulation to illustrate parameter scan of the basic virus model #' |
simulate_basicvirus_ode |
Basic Virus Model |
simulate_basicvirus_stochastic |
Basic Virus Model |
simulate_chronicvirusir_ode |
Chronic Virus Infection and IR Model |
simulate_confint_fit |
Fit a simple viral infection model and compute confidence intervals |
simulate_drugresistance_stochastic |
Stochastic simulation of a compartmental acute virus infection model with treatment and drug resistant strain |
simulate_extendedbacteria_ode |
Extended Bacteria model - ODE |
simulate_fludrug_fit |
Fitting a simple viral infection model with 2 types of drug mechanisms to influenza data |
simulate_modelcomparison_fit |
Fitting 2 simple viral infection models to influenza data |
simulate_modelvariants_ode |
Simulation of a viral infection model with immune response The simulation illustrates different alternative models. |
simulate_pkpdmodel_ode |
PkPd Virus model |
simulate_usanalysis |
Simulation to illustrate uncertainty and sensitivity analysis |
simulate_virusandir_ode |
Simulation of a viral infection model with an immune response |
simulate_virusandtx_ode |
Simulation of a basic viral infection model with drug treatment |