DSAIRM |
DSAIRM: A package to learn about Dynamical Systems Approaches to Immune Response Modeling |

dsairmmenu |
The main menu for the DSAIRM package |

generate_documentation |
A helper function which processes and displays the documentation part for each app |

generate_equations |
Turn a model into a set of differential equations displayed as LaTeX/HTML object |

generate_fctcall |
A helper function that produces a call to a simulator function for specific settings |

generate_ggplot |
A helper function that takes simulation results and produces ggplot plots |

generate_plotly |
A helper function that takes simulation results and produces plotly plots |

generate_shinyinput |
A helper function that takes a model and generates shiny UI elements |

generate_text |
A helper function that takes result from the simulators and produces text output |

hayden96flu |
Influenza virus load data |

run_model |
A function that runs an app for specific settings and processes results for plot and text generation |

simulate_basicbacteria_discrete |
Basic Bacteria model - discrete |

simulate_basicbacteria_modelexploration |
Simulation to illustrate parameter scan of the basic bacteria model #' |

simulate_basicbacteria_ode |
Basic Bacteria model - ODE |

simulate_basicvirus_fit |
Fitting a simple viral infection models to influenza data |

simulate_basicvirus_modelexploration |
Simulation to illustrate parameter scan of the basic virus model #' |

simulate_basicvirus_ode |
Basic Virus model - ODE |

simulate_basicvirus_stochastic |
Stochastic simulation of a compartmental acute virus infection model |

simulate_confint_fit |
Fit a simple viral infection model and compute confidence intervals |

simulate_drugresistance_stochastic |
Stochastic simulation of a compartmental acute virus infection model with treatment and drug resistant strain |

simulate_fludrug_fit |
Fitting a simple viral infection model with 2 types of drug mechanisms to influenza data |

simulate_modelcomparison_fit |
Fitting 2 simple viral infection models to influenza data |

simulate_modelvariants_ode |
Simulation of a viral infection model with immune response The simulation illustrates different alternative models. |

simulate_pkpdmodel_ode |
PkPd Virus model |

simulate_usanalysis |
Simulation to illustrate uncertainty and sensitivity analysis |

simulate_virusandir_ode |
Simulation of a viral infection model with an immune response |

simulate_virusandtx_ode |
Simulation of a basic viral infection model with drug treatment |