NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains

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Documentation for package ‘nat.templatebrains’ version 1.1

Help Pages

add_reglist Add reglist object describing a bridging/mirroring registration
add_reg_folders Set or list local folders containing registrations for nat.templatebrains
allreg_dataframe Make data.frame with details of all registrations
all_templatebrains Find all template brains or those matching a given image volume
as.character.templatebrain Template brain methods
as.im3d.templatebrain Template brain methods
as.templatebrain Use image file or other object to initialise template brain
as.templatebrain.character Use image file or other object to initialise template brain
as.templatebrain.im3d Use image file or other object to initialise template brain
as.templatebrain.templatebrain Use image file or other object to initialise template brain
boundingbox.templatebrain Template brain methods
bridging_graph Make or query connected graph of bridging registrations
bridging_sequence Find sequence of one or more bridging registrations
dim.templatebrain Template brain methods
display_slice Display an image slice in 3D
download_reg_repo Download and register git repository containing registrations
extra_reg_folders Set or list local folders containing registrations for nat.templatebrains
FCWB.demo Sample template brain: FlyCircuit Whole Brain
fit_xform Fit affine or thin plate spline transform to arbitrary transformation
fit_xform_brain Fit a single transform to a bridging registration between brains
guess_templatebrain Find all template brains or those matching a given image volume
is.templatebrain Template brain methods
local_reg_dir_for_url Standard local checkout location for extra registration directories
mirror_brain Mirror 3D object around a given axis, optionally using a warping registration
origin.templatebrain Template brain methods
plot3d.templatebrain Plot 3D surface of a template brain
print.templatebrain Template brain methods
regtemplate Get or set the registration template space in which an object lives
regtemplate<- Get or set the registration template space in which an object lives
shortest_bridging_seq Make or query connected graph of bridging registrations
templatebrain Construct templatebrain object for an image registration template
templatebrain-meths Template brain methods
update_reg_repos Update local copy of git repository containing registrations
voxdims.templatebrain Template brain methods
xform_brain Transform 3D object between template brains