add_reglist |
Add reglist object describing a bridging/mirroring registration |
add_reg_folders |
Set or list local folders containing registrations for nat.templatebrains |
allreg_dataframe |
Make data.frame with details of all registrations |
all_templatebrains |
Find all template brains or those matching a given image volume |
as.character.templatebrain |
Template brain methods |
as.im3d.templatebrain |
Template brain methods |
as.templatebrain |
Use image file or other object to initialise template brain |
as.templatebrain.character |
Use image file or other object to initialise template brain |
as.templatebrain.im3d |
Use image file or other object to initialise template brain |
as.templatebrain.templatebrain |
Use image file or other object to initialise template brain |
boundingbox.templatebrain |
Template brain methods |
bridging_graph |
Make or query connected graph of bridging registrations |
bridging_sequence |
Find sequence of one or more bridging registrations |
dim.templatebrain |
Template brain methods |
display_slice |
Display an image slice in 3D |
download_reg_repo |
Download and register git repository containing registrations |
extra_reg_folders |
Set or list local folders containing registrations for nat.templatebrains |
FCWB.demo |
Sample template brain: FlyCircuit Whole Brain |
fit_xform |
Fit affine or thin plate spline transform to arbitrary transformation |
fit_xform_brain |
Fit a single transform to a bridging registration between brains |
guess_templatebrain |
Find all template brains or those matching a given image volume |
is.templatebrain |
Template brain methods |
local_reg_dir_for_url |
Standard local checkout location for extra registration directories |
mirror_brain |
Mirror 3D object around a given axis, optionally using a warping registration |
origin.templatebrain |
Template brain methods |
plot3d.templatebrain |
Plot 3D surface of a template brain |
print.templatebrain |
Template brain methods |
regtemplate |
Get or set the registration template space in which an object lives |
regtemplate<- |
Get or set the registration template space in which an object lives |
shortest_bridging_seq |
Make or query connected graph of bridging registrations |
templatebrain |
Construct templatebrain object for an image registration template |
templatebrain-meths |
Template brain methods |
update_reg_repos |
Update local copy of git repository containing registrations |
voxdims.templatebrain |
Template brain methods |
xform_brain |
Transform 3D object between template brains |