Manipulate SNOMED CT Diagnosis Lists

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Documentation for package ‘Rdiagnosislist’ version 1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

addInactiveConcepts	Add inactive concepts to a SNOMEDcodelist or SNOMEDconcept vector
ancestors	Ancestors and descendants of SNOMED CT concepts
as.data.frame.SNOMEDconcept	Returns the SNOMED CT concept IDs for a set of terms
as.integer64.SNOMEDconcept	Returns the SNOMED CT concept IDs for a set of terms
as.SNOMEDcodelist	Convert a data.frame to a SNOMEDcodelist object
as.SNOMEDconcept	Returns the SNOMED CT concept IDs for a set of terms
attrConcept	Retrieve all attributes of a set of SNOMED CT concepts
c.SNOMEDconcept	Concatenate vectors of SNOMED CT concepts
children	Ancestors and descendants of SNOMED CT concepts
CONCEPT	Sample concept table from SNOMED CT dictionary
contractSNOMED	Expand or contract a SNOMEDcodelist
createSNOMEDindices	Create indices for tables in a SNOMED environment
descendants	Ancestors and descendants of SNOMED CT concepts
DESCRIPTION	Sample description table from SNOMED CT dictionary
description	Obtain descriptions for a set of SNOMED CT terms
expandSNOMED	Expand or contract a SNOMEDcodelist
export	Export a SNOMEDcodelist
export.SNOMEDcodelist	Export a SNOMEDcodelist
exportSNOMEDenvir	Export a SNOMED environment to a folder
EXTENDEDMAP	Sample extended map table from SNOMED CT dictionary
getMaps	Obtain Read 2, CTV3, ICD-10 and OPCS4 maps for SNOMED CT concepts
getRefset	Retrieves a Refset from the REFSET table
getSNOMED	Retrieves SNOMED CT dictionary from the global environment
hasAttributes	Whether SNOMED CT concepts have particular attributes
HISTORY	Sample history substitution table from SNOMED CT dictionary
htmlCodelistHierarchy	Export a SNOMEDcodelist hierarchy to HTML
inactiveIncluded	Check if inactive terms are included in SNOMED CT dictionary
intersect	Set operations for SNOMEDconcept vectors
intersect.default	Set operations for SNOMEDconcept vectors
intersect.SNOMEDconcept	Set operations for SNOMEDconcept vectors
is.SNOMEDcodelist	Check if an object is a SNOMEDcodelist
is.SNOMEDconcept	Check if an object is a SNOMEDconcept
loadREADMAPS	Load mappings from Read to SNOMED CT into an R data.table
loadSNOMED	Load SNOMED CT files from a folder(s) into R data.table objects
parents	Ancestors and descendants of SNOMED CT concepts
print.SNOMEDcodelist	Display a SNOMEDcodelist on screen
print.SNOMEDconcept	Display a SNOMEDconcept object with descriptions
QUERY	Sample query table from SNOMED CT dictionary
Rdiagnosislist	Rdiagnosislist: A package for manipulating SNOMED CT diagnosis lists
READMAPS	Sample mappings from Read to SNOMED CT
REFSET	Sample refset table from SNOMED CT dictionary
relatedConcepts	Obtain related concepts for a set of SNOMED CT concepts
RELATIONSHIP	Sample relationship tables from SNOMED CT dictionary
sampleSNOMED	Sample SNOMED CT dictionary
semanticType	Retrieves semantic types using the text 'tag' in the description
setdiff	Set operations for SNOMEDconcept vectors
setdiff.default	Set operations for SNOMEDconcept vectors
setdiff.SNOMEDconcept	Set operations for SNOMEDconcept vectors
showCodelistHierarchy	Expand or contract a SNOMEDcodelist
SIMPLEMAP	Sample SIMPLE map table from SNOMED CT dictionary
simplify	Retrieves closest single ancestor within a given set of SNOMED CT concepts
SNOMEDcodelist	Convert a data.frame to a SNOMEDcodelist object
SNOMEDconcept	Returns the SNOMED CT concept IDs for a set of terms
SNOMED_CONCEPT	Sample concept table from SNOMED CT dictionary
SNOMED_DESCRIPTION	Sample description table from SNOMED CT dictionary
SNOMED_EXTENDEDMAP	Sample extended map table from SNOMED CT dictionary
SNOMED_REFSET	Sample refset table from SNOMED CT dictionary
SNOMED_RELATIONSHIP	Sample relationship tables from SNOMED CT dictionary
SNOMED_SIMPLEMAP	Sample SIMPLE map table from SNOMED CT dictionary
SNOMED_STATEDRELATIONSHIP	Sample relationship tables from SNOMED CT dictionary
STATEDRELATIONSHIP	Sample relationship tables from SNOMED CT dictionary
union	Set operations for SNOMEDconcept vectors
union.default	Set operations for SNOMEDconcept vectors
union.SNOMEDconcept	Set operations for SNOMEDconcept vectors
unique.SNOMEDconcept	Unique vector of SNOMED CT concepts