benchmarkRuntime |
Benchmark runtimes of several functions |
createData |
Simulate test data |
createDHARMa |
Create a DHARMa object from hand-coded simulations or Bayesian posterior predictive simulations |
DHARMa |
DHARMa - Residual Diagnostics for HierArchical (Multi-level / Mixed) Regression Models |
getFitted |
Get fitted / predicted values |
getFitted.default |
Get fitted / predicted values |
getFitted.gam |
Get fitted / predicted values |
getFitted.HLfit |
Get fitted / predicted values |
getFitted.MixMod |
Get fitted / predicted values |
getFixedEffects |
Extract fixed effects of a supported model |
getFixedEffects.default |
Extract fixed effects of a supported model |
getFixedEffects.MixMod |
Extract fixed effects of a supported model |
getObservedResponse |
Get model response |
getObservedResponse.default |
Get model response |
getObservedResponse.HLfit |
Get model response |
getQuantile |
calculate quantiles |
getRandomState |
Record and restore a random state |
getRefit |
Get model refit |
getRefit.default |
Get model refit |
getRefit.glmmTMB |
Get model refit |
getRefit.HLfit |
Get model refit |
getRefit.lm |
Get model refit |
getRefit.MixMod |
Get model refit |
getResiduals |
Get model residuals |
getResiduals.default |
Get fitted / predicted values |
getResiduals.MixMod |
Get model residuals |
getSimulations |
Get model simulations |
getSimulations.default |
Get model simulations |
getSimulations.gam |
Get model simulations |
getSimulations.glmmTMB |
Get model simulations |
getSimulations.HLfit |
Get model simulations |
getSimulations.lmerMod |
Get model simulations |
getSimulations.MixMod |
Get model simulations |
getSimulations.negbin |
Get model simulations |
hist.DHARMa |
Histogram of DHARMa residuals |
hurricanes |
Hurricanes |
outliers |
Return outliers |
plot.DHARMa |
DHARMa standard residual plots |
plot.DHARMaBenchmark |
Plots DHARMa benchmarks |
plotConventionalResiduals |
Conventional residual plot |
plotQQunif |
Quantile-quantile plot for a uniform distribution |
plotResiduals |
Generic res ~ pred scatter plot with spline or quantile regression on top |
plotSimulatedResiduals |
DHARMa standard residual plots |
print.DHARMa |
Print simulated residuals |
recalculateResiduals |
Recalculate residuals with grouping |
residuals.DHARMa |
Return residuals of a DHARMa simulation |
runBenchmarks |
Benchmark calculations |
simulateLRT |
Simulated likelihood ratio tests for (generalized) linear mixed models |
simulateResiduals |
Create simulated residuals |
testCategorical |
Test for categorical dependencies |
testDispersion |
DHARMa dispersion tests |
testGeneric |
Generic simulation test of a summary statistic |
testOutliers |
Test for outliers |
testOverdispersion |
Simulated overdisperstion tests |
testOverdispersionParametric |
Parametric overdisperstion tests |
testPDistribution |
Plot distribution of p-values |
testQuantiles |
Test for quantiles |
testResiduals |
DHARMa general residual test |
testSimulatedResiduals |
Residual tests |
testSpatialAutocorrelation |
Test for distance-based (spatial, phylogenetic or similar) autocorrelation |
testTemporalAutocorrelation |
Test for temporal autocorrelation |
testUniformity |
Test for overall uniformity |
testZeroInflation |
Tests for zero-inflation |
transformQuantiles |
Transform quantiles to pdf (deprecated) |