compile_stan |
Compile stan-model |
create_stan_file |
Create a "skeleton" for custom Stan code |
eval_joint_prior |
Evaluate the joint variance prior |
eval_pc_prior |
Evaluate PC prior for variance proportion |
expit |
expit |
extract_posterior_effect |
Extract the posterior of a random effect |
extract_posterior_parameter |
Extract the posterior parameter estimate |
find_pc_prior_param |
Find suitable PC prior parameters |
get_parameter_order |
Internal variance parameter order |
inference_inla |
Run inference |
inference_stan |
Run inference |
latin_data |
Latin square experiment data |
logit |
logit |
makemyprior_example_model |
Returning a simple example prior object |
makemyprior_gui |
Graphical prior construction |
makemyprior_models |
List available priors, latent models and likelihoods |
makemyprior_plotting |
List of available plotting functions |
make_eval_prior_data |
Evaluate the joint variance prior |
make_prior |
Making a prior object |
mc |
Define latent component |
neonatal_data |
Neonatal mortality data |
plot.mmp_inla |
Plotting |
plot.mmp_prior |
Plotting |
plot.mmp_stan |
Plotting |
plot_marginal_prior |
Plotting prior for a single parameter (weight or variance (not standard deviation)) |
plot_posterior_fixed |
Plotting posterior distributions |
plot_posterior_precision |
Plotting posterior variances, standard deviations or precisions |
plot_posterior_stan |
Plotting posterior distributions |
plot_posterior_stdev |
Plotting posterior variances, standard deviations or precisions |
plot_posterior_variance |
Plotting posterior variances, standard deviations or precisions |
plot_prior |
Plotting prior distributions |
plot_several_posterior_stan |
Plotting several posterior distributions |
plot_tree_structure |
Plotting the prior tree structure graph |
print.mmp_inla |
Print |
print.mmp_prior |
Print |
print.mmp_stan |
Print |
scale_precmat |
Scaling precision matrix |
summary.mmp_inla |
Short summary |
summary.mmp_prior |
Short summary |
summary.mmp_stan |
Short summary |
typical_variance |
Compute the typical variance |
wheat_data |
Genomic wheat breeding model data |