Intuitive Construction of Joint Priors for Variance Parameters

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Documentation for package ‘makemyprior’ version 1.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

compile_stan	Compile stan-model
create_stan_file	Create a "skeleton" for custom Stan code
eval_joint_prior	Evaluate the joint variance prior
eval_pc_prior	Evaluate PC prior for variance proportion
expit	expit
extract_posterior_effect	Extract the posterior of a random effect
extract_posterior_parameter	Extract the posterior parameter estimate
find_pc_prior_param	Find suitable PC prior parameters
get_parameter_order	Internal variance parameter order
inference_inla	Run inference
inference_stan	Run inference
latin_data	Latin square experiment data
logit	logit
makemyprior_example_model	Returning a simple example prior object
makemyprior_gui	Graphical prior construction
makemyprior_models	List available priors, latent models and likelihoods
makemyprior_plotting	List of available plotting functions
make_eval_prior_data	Evaluate the joint variance prior
make_prior	Making a prior object
mc	Define latent component
neonatal_data	Neonatal mortality data
plot.mmp_inla	Plotting
plot.mmp_prior	Plotting
plot.mmp_stan	Plotting
plot_marginal_prior	Plotting prior for a single parameter (weight or variance (not standard deviation))
plot_posterior_fixed	Plotting posterior distributions
plot_posterior_precision	Plotting posterior variances, standard deviations or precisions
plot_posterior_stan	Plotting posterior distributions
plot_posterior_stdev	Plotting posterior variances, standard deviations or precisions
plot_posterior_variance	Plotting posterior variances, standard deviations or precisions
plot_prior	Plotting prior distributions
plot_several_posterior_stan	Plotting several posterior distributions
plot_tree_structure	Plotting the prior tree structure graph
print.mmp_inla	Print
print.mmp_prior	Print
print.mmp_stan	Print
scale_precmat	Scaling precision matrix
summary.mmp_inla	Short summary
summary.mmp_prior	Short summary
summary.mmp_stan	Short summary
typical_variance	Compute the typical variance
wheat_data	Genomic wheat breeding model data