tdb_collect |
Generic Methods |
tdb_collect-method |
Collect the query results to finalize piped expression |
tdb_filter |
Generic Methods |
tdb_filter-method |
Filter from array for query via logical conditions |
tdb_select |
Generic Methods |
tdb_select-method |
Select attributes from array for query |
tile |
Generic Methods |
tile-method |
Return the 'tiledb_dim' tile extent |
tiledb_array |
Constructs a tiledb_array object backed by a persisted tiledb array uri |
tiledb_array-class |
An S4 class for a TileDB Array |
tiledb_array_apply_aggregate |
Run an aggregate query on the given (sparse) array and attribute |
tiledb_array_close |
Close a TileDB Array |
tiledb_array_create |
Creates a new TileDB array given an input schema. |
tiledb_array_delete_fragments |
Delete fragments written between the start and end times given |
tiledb_array_delete_fragments_list |
Delete fragments written given by their URIs |
tiledb_array_get_non_empty_domain_from_index |
Get the non-empty domain from a TileDB Array by index |
tiledb_array_get_non_empty_domain_from_name |
Get the non-empty domain from a TileDB Array by name |
tiledb_array_has_enumeration |
Check for Enumeration (aka Factor aka Dictionary) |
tiledb_array_is_heterogeneous |
Check for Heterogeneous Domain |
tiledb_array_is_homogeneous |
Check for Homogeneous Domain |
tiledb_array_is_open |
Test if TileDB Array is open |
tiledb_array_open |
Open a TileDB Array |
tiledb_array_open_at |
Open a TileDB Array at Timestamp |
tiledb_array_schema |
Constructs a 'tiledb_array_schema' object |
tiledb_array_schema-class |
An S4 class for the TileDB array schema |
tiledb_array_schema_check |
Check the schema for correctness |
tiledb_array_schema_evolution |
Creates a 'tiledb_array_schema_evolution' object |
tiledb_array_schema_evolution-class |
An S4 class for a TileDB ArraySchemaEvolution object |
tiledb_array_schema_evolution_add_attribute |
Add an Attribute to a TileDB Array Schema Evolution object |
tiledb_array_schema_evolution_add_enumeration |
Add an Enumeration to a TileDB Array Schema Evolution object |
tiledb_array_schema_evolution_add_enumeration_empty |
Evolve an Array Schema by adding an empty Enumeration |
tiledb_array_schema_evolution_array_evolve |
Evolve an Array Schema |
tiledb_array_schema_evolution_drop_attribute |
Drop an attribute given by name from a TileDB Array Schema Evolution object |
tiledb_array_schema_evolution_drop_enumeration |
Drop an Enumeration given by name from a TileDB Array Schema Evolution object |
tiledb_array_schema_evolution_expand_current_domain |
Expand an the Current Domain of an Array via Array Schema Evolution |
tiledb_array_schema_evolution_extend_enumeration |
Extend an Evolution via Array Schema Evolution |
tiledb_array_schema_get_allows_dups |
Returns logical value whether the array schema allows duplicate values or not. This is only valid for sparse arrays. |
tiledb_array_schema_get_capacity |
Retrieve schema capacity (for sparse fragments) |
tiledb_array_schema_get_current_domain |
Get the Current Domain of an Array Schema |
tiledb_array_schema_set_allows_dups |
Sets toggle whether the array schema allows duplicate values or not. This is only valid for sparse arrays. |
tiledb_array_schema_set_capacity |
Sets the schema capacity (for sparse fragments) |
tiledb_array_schema_set_coords_filter_list |
Set a Filter List for Coordinate of a TileDB Schema |
tiledb_array_schema_set_current_domain |
Set a Current Domain of an Array Schema |
tiledb_array_schema_set_enumeration_empty |
Add an empty Enumeration to a Schema |
tiledb_array_schema_set_offsets_filter_list |
Set a Filter List for Variable-Sized Offsets of a TileDB Schema |
tiledb_array_schema_set_validity_filter_list |
Set a Filter List for Validity of a TileDB Schema |
tiledb_array_schema_version |
Check the version of the array schema |
tiledb_array_upgrade_version |
Upgrade an Array to the current TileDB Array Schema Format |
tiledb_arrow_array_del |
(Deprecated) Allocate (or Release) Arrow Array and Schema Pointers |
tiledb_arrow_array_ptr |
(Deprecated) Allocate (or Release) Arrow Array and Schema Pointers |
tiledb_arrow_schema_del |
(Deprecated) Allocate (or Release) Arrow Array and Schema Pointers |
tiledb_arrow_schema_ptr |
(Deprecated) Allocate (or Release) Arrow Array and Schema Pointers |
tiledb_attr |
Constructs a 'tiledb_attr' object |
tiledb_attr-class |
An S4 class for a TileDB attribute |
tiledb_attribute_get_cell_size |
Get the TileDB Attribute cell size |
tiledb_attribute_get_cell_val_num |
Return the number of scalar values per attribute cell |
tiledb_attribute_get_enumeration |
Get the TileDB Attribute Enumeration |
tiledb_attribute_get_enumeration_ptr |
Get the TileDB Attribute Enumeration |
tiledb_attribute_get_fill_value |
Get the fill value for a TileDB Attribute |
tiledb_attribute_get_nullable |
Get the TileDB Attribute Nullable flag value |
tiledb_attribute_has_enumeration |
Test if TileDB Attribute has an Enumeration |
tiledb_attribute_is_ordered_enumeration_ptr |
Check if TileDB Attribute Enumeration is Ordered |
tiledb_attribute_is_variable_sized |
Check whether TileDB Attribute is variable-sized |
tiledb_attribute_set_cell_val_num |
Set the number of scalar values per attribute cell |
tiledb_attribute_set_enumeration_name |
Set a TileDB Attribute Enumeration Name |
tiledb_attribute_set_fill_value |
Set the fill value for a TileDB Attribute |
tiledb_attribute_set_nullable |
Set the TileDB Attribute Nullable flags |
tiledb_config |
Creates a 'tiledb_config' object |
tiledb_config-class |
An S4 class for a TileDB configuration |
tiledb_config_as_built_json |
Return the 'AsBuilt' JSON string |
tiledb_config_as_built_show |
Display the 'AsBuilt' JSON string |
tiledb_config_load |
Load a saved 'tiledb_config' file from disk |
tiledb_config_save |
Save a 'tiledb_config' object ot a local text file |
tiledb_config_unset |
Unset a TileDB Config parameter to its default value |
tiledb_ctx |
Creates a 'tiledb_ctx' object |
tiledb_ctx-class |
An S4 class for a TileDB context |
tiledb_ctx_set_default_tags |
Sets default context tags |
tiledb_ctx_set_tag |
Sets a string:string "tag" on the Ctx |
tiledb_ctx_stats |
Return context statistics as a JSON string |
tiledb_current_domain |
Creates a 'tiledb_current_domain' object |
tiledb_current_domain-class |
An S4 class for a TileDB CurrentDomain object |
tiledb_current_domain_get_ndrectangle |
Get a 'tiledb_ndrectangle' from a 'tiledb_current_domain' object |
tiledb_current_domain_get_type |
Get 'tiledb_current_domain' data type as string |
tiledb_current_domain_is_empty |
Test 'tiledb_current_domain' object for being empty |
tiledb_current_domain_set_ndrectangle |
Set a 'tiledb_ndrectangle' in a 'tiledb_current_domain' object |
tiledb_datatype_R_type |
Map from TileDB type to R datatype |
tiledb_delete_metadata |
Delete a TileDB Array Metadata object given by key |
tiledb_dense |
Constructs a tiledb_array object backed by a persisted tiledb array uri |
tiledb_dim |
Constructs a 'tiledb_dim' object |
tiledb_dim-class |
An S4 class for a TileDB dimension object |
tiledb_dim_get_cell_val_num |
Return the number of scalar values per dimension cell |
tiledb_domain |
Constructs a 'tiledb_domain' object |
tiledb_domain-class |
An S4 class for a TileDB domain |
tiledb_domain_get_dimension_from_index |
Returns a Dimension indicated by index for the given TileDB Domain |
tiledb_domain_get_dimension_from_name |
Returns a Dimension indicated by name for the given TileDB Domain |
tiledb_domain_has_dimension |
Check a domain for a given dimension name |
tiledb_error_message |
Return the error message for a given context |
tiledb_filestore_buffer_export |
Export from a TileDB Filestore to a character variable |
tiledb_filestore_buffer_import |
Import size bytes from a string into a TileDB Filestore |
tiledb_filestore_schema_create |
Create an array schema from a given URI with schema |
tiledb_filestore_size |
Return (uncompressed) TileDB Filestore size |
tiledb_filestore_uri_export |
Export a file from a TileDB Filestore |
tiledb_filestore_uri_import |
Import a file into a TileDB Filestore |
tiledb_filter |
Constructs a 'tiledb_filter' object |
tiledb_filter-class |
An S4 class for a TileDB filter |
tiledb_filter_get_option |
Returns the filter's option |
tiledb_filter_list |
Constructs a 'tiledb_filter_list' object |
tiledb_filter_list-class |
An S4 class for a TileDB filter list |
tiledb_filter_list_get_max_chunk_size |
Returns the filter_list's max_chunk_size |
tiledb_filter_list_set_max_chunk_size |
Set the filter_list's max_chunk_size |
tiledb_filter_set_option |
Set the option for a filter |
tiledb_filter_type |
Returns the type of the filter used |
tiledb_fragment_info |
Constructs a 'tiledb_fragment_info' object |
tiledb_fragment_info-class |
An S4 class for a TileDB fragment info object |
tiledb_fragment_info_dense |
Return if a fragment info index is dense |
tiledb_fragment_info_dump |
Dump the fragment info to console |
tiledb_fragment_info_get_cell_num |
Return a fragment info number of cells for a given fragment index |
tiledb_fragment_info_get_non_empty_domain_index |
Return a fragment info non-empty domain from index |
tiledb_fragment_info_get_non_empty_domain_name |
Return a fragment info non-empty domain from name |
tiledb_fragment_info_get_non_empty_domain_var_index |
Return a fragment info non-empty domain variable from index |
tiledb_fragment_info_get_non_empty_domain_var_name |
Return a fragment info non-empty domain variable from name |
tiledb_fragment_info_get_num |
Return a fragment info number of fragments |
tiledb_fragment_info_get_size |
Return a fragment info fragment size for a given fragment index |
tiledb_fragment_info_get_timestamp_range |
Return a fragment info timestamp range for a given fragment index |
tiledb_fragment_info_get_to_vacuum_num |
Return the number of fragment info elements to be vacuumed |
tiledb_fragment_info_get_to_vacuum_uri |
Return fragment info URI of the to be vacuumed index |
tiledb_fragment_info_get_unconsolidated_metadata_num |
Return fragment info number of unconsolidated metadata |
tiledb_fragment_info_get_version |
Return a fragment info version for a given fragment index |
tiledb_fragment_info_has_consolidated_metadata |
Return if a fragment info index has consolidated metadata |
tiledb_fragment_info_sparse |
Return if a fragment info index is sparse |
tiledb_fragment_info_uri |
Return a fragment info URI given its index |
tiledb_get_all_metadata |
Return all TileDB Array Metadata objects as a named list |
tiledb_get_context |
Retrieve a TileDB context object from the package cache |
tiledb_get_metadata |
Return a TileDB Array Metadata object given by key |
tiledb_get_query_status |
Retrieve the cached status of the last finalized query |
tiledb_get_vfs |
Retrieve a TileDB VFS object from the package environment and cache |
tiledb_group |
Creates a 'tiledb_group' object |
tiledb_group-class |
An S4 class for a TileDB Group object |
tiledb_group_add_member |
Add Member to TileDB Group |
tiledb_group_close |
Close a TileDB Group |
tiledb_group_create |
Create a TileDB Group at the given path |
tiledb_group_delete |
Deletes all written data from a 'tiledb_group' object |
tiledb_group_delete_metadata |
Deletes Metadata from a TileDB Group |
tiledb_group_get_all_metadata |
Return all Metadata from a TileDB Group |
tiledb_group_get_config |
Get a TileDB Config from a TileDB Group |
tiledb_group_get_metadata |
Accesses Metadata from a TileDB Group |
tiledb_group_get_metadata_from_index |
Accesses Metadata by Index from a TileDB Group |
tiledb_group_has_metadata |
Checks for Metadata in a TileDB Group |
tiledb_group_is_open |
Test if TileDB Group is open |
tiledb_group_is_relative |
Test if a Named Group is Using a Relative URI |
tiledb_group_member |
Get a Member (Description) by Index from TileDB Group |
tiledb_group_member_count |
Get Member Count from TileDB Group |
tiledb_group_member_dump |
Dump the TileDB Group to String |
tiledb_group_metadata_num |
Returns Number of Metadata Objects a TileDB Group |
tiledb_group_open |
Open a TileDB Group |
tiledb_group_put_metadata |
Write Metadata to a TileDB Group |
tiledb_group_query_type |
Return a TileDB Group query type |
tiledb_group_remove_member |
Remove Member from TileDB Group |
tiledb_group_set_config |
Set a TileDB Config for a TileDB Group |
tiledb_group_uri |
Return a TileDB Group URI |
tiledb_has_metadata |
Test if TileDB Array has Metadata |
tiledb_is_supported_fs |
Query if a TileDB backend is supported |
tiledb_ndim |
Generic Methods |
tiledb_ndim-method |
Return the number of dimensions associated with the 'tiledb_array_schema' |
tiledb_ndim-method |
Returns the number of dimensions for a tiledb domain object |
tiledb_ndim-method |
Returns the number of dimensions of the 'tiledb_domain' |
tiledb_ndrectangle |
Creates a 'tiledb_ndrectangle' object |
tiledb_ndrectangle-class |
An S4 class for a TileDB NDRectangle object |
tiledb_ndrectangle_get_range |
Get a range from a 'tiledb_ndrectangle' object |
tiledb_ndrectangle_set_range |
Set a range on a 'tiledb_ndrectangle' object |
tiledb_num_metadata |
Return count of TileDB Array Metadata objects |
tiledb_object_ls |
List TileDB resources at a given root URI path |
tiledb_object_mv |
Move a TileDB resource to new uri path |
tiledb_object_rm |
Removes a TileDB resource |
tiledb_object_type |
Return the TileDB object type string of a TileDB resource |
tiledb_object_walk |
Recursively discover TileDB resources at a given root URI path |
tiledb_put_metadata |
Store an object in TileDB Array Metadata under given key |
tiledb_query |
Creates a 'tiledb_query' object |
tiledb_query-class |
An S4 class for a TileDB Query object |
tiledb_query_add_range |
Set a range for a given query |
tiledb_query_add_range_with_type |
Set a range for a given query, also supplying type |
tiledb_query_alloc_buffer_ptr_char |
Allocate a Query buffer for reading a character attribute |
tiledb_query_apply_aggregate |
Run an aggregate oprtation on the given query attribute |
tiledb_query_buffer_alloc_ptr |
Allocate a Query buffer for a given type |
tiledb_query_condition |
Creates a 'tiledb_query_condition' object |
tiledb_query_condition-class |
An S4 class for a TileDB QueryCondition object |
tiledb_query_condition_combine |
Combine two 'tiledb_query_condition' objects |
tiledb_query_condition_create |
Create a query condition for vector 'IN' and 'NOT_IN' operations |
tiledb_query_condition_init |
Initialize a 'tiledb_query_condition' object |
tiledb_query_condition_set_use_enumeration |
Enable use of enumeration in query condition |
tiledb_query_create_buffer_ptr |
Allocate and populate a Query buffer for a given object of a given data type. |
tiledb_query_create_buffer_ptr_char |
Allocate and populate a Query buffer for writing the given char vector |
tiledb_query_ctx |
Return query context object |
tiledb_query_export_buffer |
Export Query Buffer to Pair of Arrow IO Pointers |
tiledb_query_finalize |
Finalize TileDB Query |
tiledb_query_get_buffer_char |
Retrieve content from a Query character buffer |
tiledb_query_get_buffer_ptr |
Retrieve content from a Query buffer |
tiledb_query_get_est_result_size |
Retrieve the estimated result size for a query and attribute |
tiledb_query_get_est_result_size_var |
Retrieve the estimated result size for a query and variable-sized attribute |
tiledb_query_get_fragment_num |
Retrieve the Number of Fragments for Query |
tiledb_query_get_fragment_timestamp_range |
Retrieve the timestamp range for a given Query Fragment |
tiledb_query_get_fragment_uri |
Retrieve the URI for a given Query Fragment |
tiledb_query_get_layout |
Get TileDB Query layout |
tiledb_query_get_range |
Retrieve the query range for a query dimension and range index |
tiledb_query_get_range_num |
Retrieve the number of ranges for a query dimension |
tiledb_query_get_range_var |
Retrieve the query range for a variable-sized query dimension and range index |
tiledb_query_import_buffer |
Import to Query Buffer from Pair of Arrow IO Pointers |
tiledb_query_result_buffer_elements |
Get TileDB Query result buffer element size |
tiledb_query_result_buffer_elements_vec |
Get TileDB Query result buffer element size pair as vector |
tiledb_query_set_buffer |
Set TileDB Query buffer |
tiledb_query_set_buffer_ptr |
Assigns to a Query buffer for a given attribute |
tiledb_query_set_buffer_ptr_char |
Assign a buffer to a Query attribute |
tiledb_query_set_condition |
Set a query combination object for a query |
tiledb_query_set_layout |
Set TileDB Query layout |
tiledb_query_set_subarray |
Set subarray for TileDB Query object |
tiledb_query_stats |
Return query statistics as a JSON string |
tiledb_query_status |
Get TileDB Query status |
tiledb_query_submit |
Submit TileDB Query |
tiledb_query_submit_async |
Submit TileDB Query asynchronously without a callback returning immediately |
tiledb_query_type |
Return TileDB Query type |
tiledb_schema_get_dim_attr_status |
Get Dimension or Attribute Status |
tiledb_schema_get_enumeration_status |
Get Dimension or Attribute Status |
tiledb_schema_get_names |
Get all Dimension and Attribute Names |
tiledb_schema_get_types |
Get all Dimension and Attribute Types |
tiledb_schema_object |
Succinctly describe a TileDB array schema |
tiledb_set_context |
Store a TileDB context object in the package cache |
tiledb_set_vfs |
Store a TileDB VFS object in the package environment |
tiledb_sparse |
Constructs a tiledb_array object backed by a persisted tiledb array uri |
tiledb_stats_disable |
Disable internal TileDB statistics counters |
tiledb_stats_dump |
Dumps internal TileDB statistics to file or stdout |
tiledb_stats_enable |
Enable internal TileDB statistics counters |
tiledb_stats_print |
Print internal TileDB statistics |
tiledb_stats_raw_dump |
Dumps internal TileDB statistics as JSON to a string |
tiledb_stats_raw_get |
Gets internal TileDB statistics as JSON string |
tiledb_stats_raw_print |
Print internal TileDB statistics as JSON |
tiledb_stats_reset |
Reset internal TileDB statistics counters |
tiledb_subarray |
Constructs a 'tiledb_subarray' object from a TileDB Query |
tiledb_subarray-class |
An S4 class for a TileDB Subarray |
tiledb_subarray_to_query |
Apply a Subarray to a Query |
tiledb_version |
The version of the libtiledb library |
tiledb_vfs |
Creates a 'tiledb_vfs' object |
tiledb_vfs-class |
An S4 class for a TileDB VFS object |
tiledb_vfs_close |
Close a TileDB VFS Filehandle |
tiledb_vfs_copy_file |
Copy a file to VFS |
tiledb_vfs_create_bucket |
Create a VFS Bucket |
tiledb_vfs_create_dir |
Create a VFS Directory |
tiledb_vfs_dir_size |
Return VFS Directory Size |
tiledb_vfs_empty_bucket |
Empty a VFS Bucket |
tiledb_vfs_file_size |
Return VFS File Size |
tiledb_vfs_is_bucket |
Check for VFS Bucket |
tiledb_vfs_is_dir |
Test for VFS Directory |
tiledb_vfs_is_empty_bucket |
Check for empty VFS Bucket |
tiledb_vfs_is_file |
Test for VFS File |
tiledb_vfs_ls |
Return VFS Directory Listing |
tiledb_vfs_ls_recursive |
Recursively list objects from given URI |
tiledb_vfs_move_dir |
Move (or rename) a VFS Directory |
tiledb_vfs_move_file |
Move (or rename) a VFS File |
tiledb_vfs_open |
Open a TileDB VFS Filehandle for reading or writing |
tiledb_vfs_read |
Read from a TileDB VFS Filehandle |
tiledb_vfs_remove_bucket |
Remove a VFS Bucket |
tiledb_vfs_remove_dir |
Remove a VFS Directory |
tiledb_vfs_remove_file |
Remove a VFS File |
tiledb_vfs_serialize |
Serialize an R Object to a VFS-accessible URI |
tiledb_vfs_sync |
Sync a TileDB VFS Filehandle |
tiledb_vfs_touch |
Touch a VFS URI Resource |
tiledb_vfs_unserialize |
Unserialize an R Object from a VFS-accessible URI |
tiledb_vfs_write |
Write to a TileDB VFS Filehandle |
tile_order |
Generic Methods |
tile_order-method |
Returns the tile layout string associated with the 'tiledb_array_schema' |
toMatrix |
Create a TileDB array from an R matrix, or return an R matrix |
toSparseMatrix |
Create (or return) a TileDB sparse array |