Cleanup and Visualization of Quadrat Data


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Documentation for package ‘quadcleanR’ version 1.1.0

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add_data Add data to existing data frame.
categorize Categorize data based on contents of a column
change_names Change names of columns
change_values Change values within a column
corals Simple Coral Quadrat Data
coral_labelset Labelset for Corals
cover_calc Calculate species cover
crop_area Crop quadrats based on area
environmental_data Sample Environmental Data for Cleaning Vignettes
final_cleaned Final cleaned quadrat data
keep_rm Keep or remove rows and columns from data frame
rm_chr Remove characters from data frame
sample_size Calculate sample sizes
softcoral_annotations Sample Annotation Data for Cropping Vignette
softcoral_LQuads Sample Quadrat Data (1m by 1m)
softcoral_SQuads Sample Quadrat Data (0.6m by 0.9m)
sum_cols Sum columns based on matching names
usable_obs Extract usable observations
visualize_app Visualize cleaned data