Chemical Metrics for Microbial Communities

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Documentation for package ‘chem16S’ version 1.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

chem16S-package	Chemical metrics for microbial communities
chem16S	Chemical metrics for microbial communities
chemlab	Formatted labels for chemical metrics
get_metadata	Template function for metadata
get_metrics	Calculate chemical metrics of community reference proteomes
map_taxa	Map taxonomic names to NCBI or GTDB taxonomy
mouse.GTDB_214	'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial
mouse.RDP	'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial
mouse.silva	'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial
physeq	Process 'phyloseq-class' objects to calculate chemical metrics
plot_metrics	Plot chemical metrics of community reference proteomes
plot_ps_metrics	Process 'phyloseq-class' objects to calculate chemical metrics
plot_ps_metrics2	Process 'phyloseq-class' objects to calculate chemical metrics
ps_metrics	Process 'phyloseq-class' objects to calculate chemical metrics
ps_taxacounts	Process 'phyloseq-class' objects to calculate chemical metrics
read_RDP	Read and filter RDP Classifier output